View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2120_low_10 (Length: 257)
Name: NF2120_low_10
Description: NF2120
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2120_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 224; Significance: 1e-123; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 50119875 - 50119636
Alignment:
| Q |
1 |
tcattgtttcaaaagatggaaactatgtgactctttatgcacccttgcatgttgtcaatgtgcatttatatcagaatgctattcttcctatgcaacaagg |
100 |
Q |
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| T |
50119875 |
tcattgtttcaaaagacggaaactatgtgactcttgatgcacccttgcatgttgtcaatgtgcatttatatcagaatactattcttcctatgcaacaagg |
50119776 |
T |
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| Q |
101 |
tggtatggtatctaaggatgctagaatgacaccttttagcctcattgtgacctttccagcaggtgcaaatgaaggagaagctaaagggaacttgttcctt |
200 |
Q |
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| T |
50119775 |
tggtatggtatctaaggatgctagaatgacaccttttagcctcattgtgacctttccagcaggtgcaaatgaaggagaagctaaagggaacttgttcctt |
50119676 |
T |
|
| Q |
201 |
gatgatgatgagatgctagaaatgaaggtaggaaatggct |
240 |
Q |
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| T |
50119675 |
gatgatgatgagatgccagaaatgaaggtaggaaatggct |
50119636 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 50109885 - 50109646
Alignment:
| Q |
1 |
tcattgtttcaaaagatggaaactatgtgactctttatgcacccttgcatgttgtcaatgtgcatttatatcagaatgctattcttcctatgcaacaagg |
100 |
Q |
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|||| |||||||||||||||| | | ||||| ||| |||||||||||||||| |||||||| || || ||||| ||| | ||||| || ||||||||||| |
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| T |
50109885 |
tcatagtttcaaaagatggaaccaacgtgacccttaatgcacccttgcatgtggtcaatgttcacttgtatcaaaattccattctaccaatgcaacaagg |
50109786 |
T |
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| Q |
101 |
tggtatggtatctaaggatgctagaatgacaccttttagcctcattgtgacctttccagcaggtgcaaatgaaggagaagctaaagggaacttgttcctt |
200 |
Q |
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||| ||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| | |||||| |
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| T |
50109785 |
tggaatgatatctaaggatgctagaatgacaccttttagcctcattgtgacatttccagcaggtgcaaatgaaggagaagctaaagggaacctattcctt |
50109686 |
T |
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| Q |
201 |
gatgatgatgagatgctagaaatgaaggtaggaaatggct |
240 |
Q |
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||||||||||| | | |||||||||| | |||||||||| |
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| T |
50109685 |
gatgatgatgaacttccagaaatgaagcttggaaatggct |
50109646 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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