View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2120_low_11 (Length: 252)
Name: NF2120_low_11
Description: NF2120
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2120_low_11 |
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| [»] chr7 (5 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 194; Significance: 1e-105; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 16 - 252
Target Start/End: Original strand, 31064108 - 31064345
Alignment:
| Q |
16 |
atcataaaaagggaagtaggttgaaagggaa-cctgttacatggaaatttcttagaacctttgagtctactaatttgacagatattacccccacgccatt |
114 |
Q |
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| T |
31064108 |
atcataaaaagggaagcaggttgaaagagaaacctgttacaaggaactttcttagaacctctgagtttgttaatttgacagacattacccccacgccatt |
31064207 |
T |
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| Q |
115 |
ttgctggaattgggccaattcctctgtcgctaaaactccttgattccggccaaacacctaatccaaacagtagggtaatacatattttgaataattaagt |
214 |
Q |
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| T |
31064208 |
ttgctggaattgggccaattcctctgtcgctaaaactccttgattccggccaaacacctaatccaaacagtagggtaatacatattttgaataattaagt |
31064307 |
T |
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| Q |
215 |
catctaagtttaattaaatcattaataaaaaagaaaca |
252 |
Q |
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| T |
31064308 |
catctaagtttaattaaatcattaataaaaaagaaaca |
31064345 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 20 - 246
Target Start/End: Original strand, 31110910 - 31111137
Alignment:
| Q |
20 |
taaaaagggaagtaggttgaaagggaacctgttacatggaaatttcttagaacctttgagtctactaatttgacagatattacccccacgccattttgct |
119 |
Q |
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| T |
31110910 |
taaaaagggaagcaggttgaaagagaacctgttgcatggaacttttttagatgtattgagtttgtcaagttgacagatgtttcccccacgccatttcgct |
31111009 |
T |
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| Q |
120 |
ggaattgggccaattcctctgtcgctaaaactccttgattccggccaaacacctaatccaaacagtagggtaat-acatattttgaataattaagtcatc |
218 |
Q |
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| T |
31111010 |
ggaattgggccaattcctctgtcgctaaaactcttagattcgggccaaacacctgatccaaacaataggataataatatattttgaataattaagtcatc |
31111109 |
T |
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| Q |
219 |
taagtttaattaaatcattaataaaaaa |
246 |
Q |
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| T |
31111110 |
taggtttaattaaatcattaataaaaaa |
31111137 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 45 - 210
Target Start/End: Original strand, 31051722 - 31051888
Alignment:
| Q |
45 |
aacctgttacatggaaatttcttagaacctttgagtctactaatttgacagatattacccccacgccattttgctggaattgggccaattcctctgtcgc |
144 |
Q |
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| T |
31051722 |
aacctgttacatggaactttctttgaacctcttagtttgttaatttgacagatgtttcccccacgccattttgctggaattggacctattcctctgtcgt |
31051821 |
T |
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| Q |
145 |
taaaactccttgattccggccaaacacctaatccaaacagtagggtaa-tacatattttgaataatt |
210 |
Q |
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| T |
31051822 |
taaaactcgccgattcgggccaaacacctaatccaaacaataggataattatatattttgaataatt |
31051888 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 35 - 183
Target Start/End: Original strand, 31147184 - 31147332
Alignment:
| Q |
35 |
gttgaaagggaacctgttacatggaaatttcttagaacctttgagtctactaatttgacagatattacccccacgccattttgctggaattgggccaatt |
134 |
Q |
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|||||||| ||||||||||||||||| |||||||||| |||||| | || |||||| || ||||||||||||||| || ||||||||| || ||| |
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| T |
31147184 |
gttgaaagagaacctgttacatggaactttcttagaagtattgagtttgtcaagttgacaaatgttacccccacgccatcttaatggaattggacctatt |
31147283 |
T |
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| Q |
135 |
cctctgtcgctaaaactccttgattccggccaaacacctaatccaaaca |
183 |
Q |
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| T |
31147284 |
cctctgtcgttaaaactctccgattccggccaaacacctaatacaaaca |
31147332 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 35 - 183
Target Start/End: Original strand, 31165009 - 31165157
Alignment:
| Q |
35 |
gttgaaagggaacctgttacatggaaatttcttagaacctttgagtctactaatttgacagatattacccccacgccattttgctggaattgggccaatt |
134 |
Q |
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|||||||| ||||||||||||||||| |||||||||| |||||| | || |||||| || ||||||||||||||| || ||||||||| || ||| |
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| T |
31165009 |
gttgaaagagaacctgttacatggaactttcttagaagtattgagtttgtcaagttgacaaatgttacccccacgccatcttaatggaattggacctatt |
31165108 |
T |
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| Q |
135 |
cctctgtcgctaaaactccttgattccggccaaacacctaatccaaaca |
183 |
Q |
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||||||||| ||||||| ||||||||||||||||||||| |||||| |
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| T |
31165109 |
cctctgtcgtgaaaactctccgattccggccaaacacctaatacaaaca |
31165157 |
T |
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