View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2120_low_15 (Length: 219)

Name: NF2120_low_15
Description: NF2120
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2120_low_15
NF2120_low_15
[»] scaffold0116 (3 HSPs)
scaffold0116 (9-204)||(47620-47815)
scaffold0116 (9-204)||(43700-43895)
scaffold0116 (38-172)||(43879-44012)
[»] chr6 (13 HSPs)
chr6 (9-204)||(25956537-25956732)
chr6 (11-204)||(27851180-27851373)
chr6 (27-204)||(20734128-20734304)
chr6 (46-182)||(22420981-22421117)
chr6 (46-191)||(2201133-2201277)
chr6 (83-201)||(34296953-34297070)
chr6 (84-169)||(19399810-19399895)
chr6 (34-182)||(18927826-18927973)
chr6 (9-55)||(19399882-19399928)
chr6 (38-172)||(25956716-25956849)
chr6 (96-132)||(18708712-18708748)
chr6 (96-132)||(23151070-23151106)
chr6 (96-132)||(27322222-27322258)
[»] chr5 (13 HSPs)
chr5 (9-204)||(5889092-5889286)
chr5 (27-204)||(12122202-12122378)
chr5 (37-204)||(21557726-21557892)
chr5 (27-204)||(21555060-21555236)
chr5 (10-125)||(21741538-21741653)
chr5 (37-204)||(30615761-30615926)
chr5 (46-191)||(24212382-24212526)
chr5 (28-202)||(31455686-31455862)
chr5 (28-202)||(31455073-31455249)
chr5 (46-191)||(35852637-35852781)
chr5 (40-204)||(36460178-36460341)
chr5 (37-122)||(17875219-17875304)
chr5 (84-172)||(5889270-5889357)
[»] chr4 (13 HSPs)
chr4 (12-204)||(13844552-13844744)
chr4 (9-204)||(46642844-46643038)
chr4 (10-125)||(15099349-15099464)
chr4 (27-204)||(33186097-33186273)
chr4 (54-125)||(15190360-15190431)
chr4 (52-180)||(15880717-15880845)
chr4 (37-204)||(35812171-35812336)
chr4 (34-182)||(9923299-9923446)
chr4 (96-182)||(11479413-11479498)
chr4 (84-172)||(46642773-46642860)
chr4 (9-55)||(15868765-15868811)
chr4 (34-132)||(19609474-19609572)
chr4 (104-172)||(52873252-52873319)
[»] chr1 (12 HSPs)
chr1 (9-204)||(28194365-28194560)
chr1 (9-204)||(43697383-43697578)
chr1 (10-125)||(49261340-49261455)
chr1 (10-125)||(20636849-20636964)
chr1 (10-125)||(35981693-35981808)
chr1 (27-182)||(51274290-51274445)
chr1 (69-202)||(12328538-12328670)
chr1 (87-191)||(8885452-8885555)
chr1 (83-163)||(51326894-51326974)
chr1 (84-172)||(28194544-28194631)
chr1 (104-172)||(43543069-43543136)
chr1 (104-175)||(46382649-46382717)
[»] chr7 (18 HSPs)
chr7 (65-204)||(15439318-15439457)
chr7 (10-125)||(9389702-9389817)
chr7 (27-204)||(30820937-30821113)
chr7 (9-127)||(17232631-17232749)
chr7 (27-201)||(36685934-36686107)
chr7 (84-204)||(37727607-37727727)
chr7 (27-171)||(38480232-38480376)
chr7 (46-204)||(11092751-11092908)
chr7 (46-204)||(11085013-11085170)
chr7 (46-191)||(9320423-9320567)
chr7 (9-127)||(8468437-8468548)
chr7 (40-203)||(15213707-15213869)
chr7 (34-132)||(12371428-12371526)
chr7 (104-175)||(45847732-45847802)
chr7 (38-172)||(8468320-8468453)
chr7 (34-132)||(13148276-13148374)
chr7 (96-132)||(11066680-11066716)
chr7 (104-172)||(14270139-14270206)
[»] chr3 (17 HSPs)
chr3 (27-204)||(31224635-31224811)
chr3 (9-204)||(12269580-12269773)
chr3 (27-204)||(15447681-15447854)
chr3 (9-122)||(18439845-18439958)
chr3 (84-204)||(1988912-1989032)
chr3 (10-125)||(1465416-1465531)
chr3 (27-171)||(31415399-31415543)
chr3 (21-125)||(49389636-49389740)
chr3 (40-204)||(11912929-11913092)
chr3 (70-182)||(6808175-6808287)
chr3 (13-70)||(20630147-20630204)
chr3 (84-195)||(49389740-49389852)
chr3 (84-172)||(49969964-49970052)
chr3 (9-55)||(49969934-49969980)
chr3 (84-172)||(18439942-18440029)
chr3 (34-132)||(40807146-40807244)
chr3 (96-132)||(40812050-40812086)
[»] scaffold0071 (1 HSPs)
scaffold0071 (27-204)||(14335-14511)
[»] chr8 (13 HSPs)
chr8 (49-188)||(39833889-39834029)
chr8 (27-204)||(21579887-21580063)
chr8 (27-204)||(29763549-29763724)
chr8 (27-172)||(41680834-41680979)
chr8 (77-204)||(42560208-42560334)
chr8 (46-163)||(32807279-32807396)
chr8 (84-204)||(18760587-18760706)
chr8 (38-175)||(38550083-38550219)
chr8 (104-204)||(3273212-3273310)
chr8 (104-175)||(27472388-27472458)
chr8 (37-90)||(22965754-22965807)
chr8 (96-132)||(19139977-19140013)
chr8 (96-132)||(39936814-39936850)
[»] chr2 (11 HSPs)
chr2 (39-203)||(24865452-24865615)
chr2 (39-191)||(22500996-22501147)
chr2 (39-191)||(22508930-22509081)
chr2 (27-203)||(7672240-7672409)
chr2 (84-202)||(6576426-6576543)
chr2 (87-204)||(2524410-2524526)
chr2 (34-132)||(24781644-24781742)
chr2 (77-133)||(22501128-22501184)
chr2 (77-133)||(22509062-22509118)
chr2 (99-170)||(24436258-24436328)
chr2 (96-132)||(24883665-24883701)
[»] scaffold1137 (1 HSPs)
scaffold1137 (10-123)||(2299-2412)
[»] scaffold1351 (1 HSPs)
scaffold1351 (27-203)||(1561-1736)
[»] scaffold0009 (2 HSPs)
scaffold0009 (9-127)||(85258-85376)
scaffold0009 (84-172)||(85187-85274)
[»] scaffold0737 (1 HSPs)
scaffold0737 (39-204)||(6359-6523)
[»] scaffold0395 (1 HSPs)
scaffold0395 (37-191)||(10900-11053)
[»] scaffold0810 (2 HSPs)
scaffold0810 (136-204)||(3068-3136)
scaffold0810 (84-132)||(2984-3032)
[»] scaffold0815 (1 HSPs)
scaffold0815 (27-159)||(479-611)
[»] scaffold0599 (2 HSPs)
scaffold0599 (40-204)||(4623-4786)
scaffold0599 (40-204)||(205-368)
[»] scaffold0080 (1 HSPs)
scaffold0080 (34-196)||(59295-59455)
[»] scaffold0371 (1 HSPs)
scaffold0371 (34-204)||(3066-3234)
[»] scaffold0061 (2 HSPs)
scaffold0061 (96-191)||(15421-15515)
scaffold0061 (96-191)||(24479-24573)
[»] scaffold0802 (1 HSPs)
scaffold0802 (34-182)||(5459-5606)
[»] scaffold0335 (1 HSPs)
scaffold0335 (96-182)||(869-954)
[»] scaffold0434 (1 HSPs)
scaffold0434 (84-172)||(6771-6859)
[»] scaffold0001 (1 HSPs)
scaffold0001 (96-182)||(76954-77038)
[»] scaffold0075 (1 HSPs)
scaffold0075 (9-55)||(8350-8396)
[»] scaffold0100 (1 HSPs)
scaffold0100 (96-172)||(36143-36218)
[»] scaffold0134 (1 HSPs)
scaffold0134 (34-132)||(10030-10128)
[»] scaffold0384 (1 HSPs)
scaffold0384 (96-132)||(8190-8226)
[»] scaffold0375 (1 HSPs)
scaffold0375 (96-132)||(9106-9142)


Alignment Details
Target: scaffold0116 (Bit Score: 160; Significance: 2e-85; HSPs: 3)
Name: scaffold0116
Description:

Target: scaffold0116; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 9 - 204
Target Start/End: Complemental strand, 47815 - 47620
Alignment:
Q  9 atcatcaaagtaaatcatattcattacgacagcaagacaacatcatttaaacatatacaacaagtaaccatcattaataatcttcatatataacaattac 108  Q
    |||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| || |    
T  47815 atcatcaaagtaaatcatattcatcacaacagcaagacaacatcatttaaacatatacaacaagtaaccatcaataataatcttcatatataacatttgc 47716  T
Q  109 aacttcatatcaacaactttcacatagtatagatcttttcacatttaatcatcaacgtaaatcaacaatattaaatcatcttagtcatcctctctg 204  Q
    |||| ||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  47715 aactacatatcaacaactttcacattatatagatcttttcacatttaatcatcaacgtaaatcaacaatattaaatcatcttaatcatcctctctg 47620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0116; HSP #2
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 9 - 204
Target Start/End: Complemental strand, 43895 - 43700
Alignment:
Q  9 atcatcaaagtaaatcatattcattacgacagcaagacaacatcatttaaacatatacaacaagtaaccatcattaataatcttcatatataacaattac 108  Q
    |||||||||||||||||||||||| || ||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||| || |    
T  43895 atcatcaaagtaaatcatattcatcacaacagcaagacaacatcatttaaacatatacagcaagtaaccatcaataataatcttcatatataacatttgc 43796  T
Q  109 aacttcatatcaacaactttcacatagtatagatcttttcacatttaatcatcaacgtaaatcaacaatattaaatcatcttagtcatcctctctg 204  Q
    |||| ||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  43795 aactccatatcaacaactttcacattatatagatcttttcacatttaatcatcaacgtaaatcaacaatattaaatcatcttaatcatcctctctg 43700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0116; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 172
Target Start/End: Complemental strand, 44012 - 43879
Alignment:
Q  38 cagcaagacaacatcatttaaacatatacaacaagtaaccatcattaataatcttcatatataacaattacaacttcatatcaacaactttcacatagta 137  Q
    ||||||| |||||||||  ||  || |||| ||||| | |||||  ||||||| ||| ||| ||| ||||||||||||||||| || ||||||||   ||    
T  44012 cagcaaggcaacatcatcaaataatttacagcaagtcatcatcaacaataatcatcaaatacaaccattacaacttcatatcagcatctttcacaatata 43913  T
Q  138 tagatcttttcacatttaatcatcaacgtaaatca 172  Q
    || || || ||||| ||||||||||| ||||||||    
T  43912 taaatattctcaca-ttaatcatcaaagtaaatca 43879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 156; Significance: 5e-83; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 9 - 204
Target Start/End: Complemental strand, 25956732 - 25956537
Alignment:
Q  9 atcatcaaagtaaatcatattcattacgacagcaagacaacatcatttaaacatatacaacaagtaaccatcattaataatcttcatatataacaattac 108  Q
    |||||||||||||||||||||||| || ||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||| || |    
T  25956732 atcatcaaagtaaatcatattcatcacaacagcaagacaacatcatttaaacatatacagcaagtaaccatcaataataatcttcatatataacatttgc 25956633  T
Q  109 aacttcatatcaacaactttcacatagtatagatcttttcacatttaatcatcaacgtaaatcaacaatattaaatcatcttagtcatcctctctg 204  Q
    |||| ||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  25956632 aactccatatcaacaactttcacattatatagatcttttcacatttaatcatcaacgtaaatcaacaatattaaatcatcttaatcatcctctctg 25956537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 111; E-Value: 3e-56
Query Start/End: Original strand, 11 - 204
Target Start/End: Original strand, 27851180 - 27851373
Alignment:
Q  11 catcaaagtaaatcatattcattacgacagcaagacaacatcatttaaacatatacaacaagtaaccatcattaataatcttcatatataac-aattaca 109  Q
    |||||||||||||||||||||  || ||| ||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| |||||||    
T  27851180 catcaaagtaaatcatattcagcacaacaacaagacaacatcatttaaacatacacaacaagtaaccatcaataataatcttcatatataacaaattaca 27851279  T
Q  110 acttcatatcaacaactttcacatagtatagatcttttcacatttaatcatcaacgtaaatcaacaatattaaatcatcttagtcatcctctctg 204  Q
    | |||||||||||  ||||||||   |||| || |||||||||||||||||||| |||||||| ||||| |||||||||||| ||||||||||||    
T  27851280 atttcatatcaacgtctttcacaatatataaatattttcacatttaatcatcaaggtaaatcatcaata-taaatcatcttattcatcctctctg 27851373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 27 - 204
Target Start/End: Complemental strand, 20734304 - 20734128
Alignment:
Q  27 attcattacgacagcaagacaacatcatttaaacatatacaacaagtaaccatcattaataatcttcatatataacaattacaacttcatatcaacaact 126  Q
    |||||| || |||||||||||||| ||||||||||||| || ||||| ||||||| |||||||| ||||||||||||||||||| |||||||||||  ||    
T  20734304 attcatcacaacagcaagacaacaccatttaaacatatgcagcaagtcaccatcaataataatcatcatatataacaattacaatttcatatcaacgtct 20734205  T
Q  127 ttcacatagtatagatcttttcacatttaatcatcaacgtaaatcaacaatattaaatcatcttagtcatcctctctg 204  Q
    ||||||   |||| || |||||||||||||||||||| |||||||| ||||| |||||||| ||| ||||||||||||    
T  20734204 ttcacaatatataaatattttcacatttaatcatcaaagtaaatcatcaata-taaatcattttattcatcctctctg 20734128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 46 - 182
Target Start/End: Original strand, 22420981 - 22421117
Alignment:
Q  46 caacatcatttaaacatatacaacaagtaaccatcattaataatcttcatatataacaattacaacttcatatcaacaactttcacatagtatagatctt 145  Q
    ||||| |||||| |||||| |||||||| || |||| |||||||| ||||||||||||||||||| |||||||||||  ||||||||   |||| || ||    
T  22420981 caacaccatttagacatatgcaacaagtcactatcaataataatcatcatatataacaattacaatttcatatcaacgtctttcacaatatataaatatt 22421080  T
Q  146 ttcacatttaatcatcaacgtaaatcaacaatattaa 182  Q
    |||||||||||||||||| |||||||| |||||||||    
T  22421081 ttcacatttaatcatcaaagtaaatcatcaatattaa 22421117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 46 - 191
Target Start/End: Original strand, 2201133 - 2201277
Alignment:
Q  46 caacatcatttaaacatatacaacaagtaaccatcattaataatcttcatatataacaattacaacttcatatcaacaactttcacatagtatagatctt 145  Q
    ||||| |||||| |||||| || ||||| ||||||| |||||||| ||||||||||||||||||| |||||||||||  ||||||||   |||| || ||    
T  2201133 caacaccatttagacatatgcagcaagtcaccatcaataataatcatcatatataacaattacaatttcatatcaacgtctttcacaatatataaatatt 2201232  T
Q  146 ttcacatttaatcatcaacgtaaatcaacaatattaaatcatctta 191  Q
    |||| ||||||||||||| |||||||| ||||||| ||||||||||    
T  2201233 ttcatatttaatcatcaaagtaaatcatcaatatt-aatcatctta 2201277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 83 - 201
Target Start/End: Complemental strand, 34297070 - 34296953
Alignment:
Q  83 taataatcttcatatataacaattacaacttcatatcaacaactttcacatagtatagatcttttcacatttaatcatcaacgtaaatcaacaatattaa 182  Q
    |||||||| ||||||||||||||||||| |||||||||||  ||||||||   |||| || ||||||||| |||||||||| |||||||| || |||| |    
T  34297070 taataatcatcatatataacaattacaatttcatatcaacgtctttcacaatatataaatattttcacatctaatcatcaaagtaaatcatcattatt-a 34296972  T
Q  183 atcatcttagtcatcctct 201  Q
    ||||||||| |||||||||    
T  34296971 atcatcttattcatcctct 34296953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 84 - 169
Target Start/End: Original strand, 19399810 - 19399895
Alignment:
Q  84 aataatcttcatatataacaattacaacttcatatcaacaactttcacatagtatagatcttttcacatttaatcatcaacgtaaa 169  Q
    ||||||| ||| ||||||| |||||||||||||||||||| ||||||||   |||| || |||||||||||||||||||| |||||    
T  19399810 aataatcatcaaatataaccattacaacttcatatcaacatctttcacaatatataaatattttcacatttaatcatcaaagtaaa 19399895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 34 - 182
Target Start/End: Original strand, 18927826 - 18927973
Alignment:
Q  34 acgacagcaagacaacatcatttaaacatatacaacaagtaaccatcattaataatcttcatatataacaattacaacttcatatcaacaactttcacat 133  Q
    ||||||||||| || || |||| ||  |||| || ||||| | |||||  ||||||| ||  ||||||| |||||||||||||||||||| ||||||||     
T  18927826 acgacagcaaggcagcaccattaaataatatgcagcaagtcaacatcaacaataatcatccaatataaccattacaacttcatatcaacatctttcacaa 18927925  T
Q  134 agtatagatcttttcacatttaatcatcaacgtaaatcaacaatattaa 182  Q
      |||| ||| |||||||||||||||||||| |||||| |||| |||||    
T  18927926 tatataaatc-tttcacatttaatcatcaacttaaatccacaacattaa 18927973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 55
Target Start/End: Original strand, 19399882 - 19399928
Alignment:
Q  9 atcatcaaagtaaatcatattcattacgacagcaagacaacatcatt 55  Q
    |||||||||||||| ||||||||| || |||| ||||||||||||||    
T  19399882 atcatcaaagtaaaccatattcatcacaacagtaagacaacatcatt 19399928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 172
Target Start/End: Complemental strand, 25956849 - 25956716
Alignment:
Q  38 cagcaagacaacatcatttaaacatatacaacaagtaaccatcattaataatcttcatatataacaattacaacttcatatcaacaactttcacatagta 137  Q
    ||||||| |||||||||  ||  || |||| ||||| | |||||  ||||||| ||| ||| ||| ||||||||||||||||| || ||||||||   ||    
T  25956849 cagcaaggcaacatcatcaaataatttacagcaagtcatcatcaacaataatcatcaaatacaaccattacaacttcatatcagcatctttcacaatata 25956750  T
Q  138 tagatcttttcacatttaatcatcaacgtaaatca 172  Q
    || || || ||||| ||||||||||| ||||||||    
T  25956749 taaatattctcaca-ttaatcatcaaagtaaatca 25956716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 96 - 132
Target Start/End: Original strand, 18708712 - 18708748
Alignment:
Q  96 atataacaattacaacttcatatcaacaactttcaca 132  Q
    ||||||| |||||||||||||||||||| ||||||||    
T  18708712 atataaccattacaacttcatatcaacatctttcaca 18708748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 96 - 132
Target Start/End: Complemental strand, 23151106 - 23151070
Alignment:
Q  96 atataacaattacaacttcatatcaacaactttcaca 132  Q
    ||||||| |||||||||||||||||||| ||||||||    
T  23151106 atataaccattacaacttcatatcaacatctttcaca 23151070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 96 - 132
Target Start/End: Complemental strand, 27322258 - 27322222
Alignment:
Q  96 atataacaattacaacttcatatcaacaactttcaca 132  Q
    ||||||| |||||||||||||||||||| ||||||||    
T  27322258 atataaccattacaacttcatatcaacatctttcaca 27322222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 148; Significance: 3e-78; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 9 - 204
Target Start/End: Complemental strand, 5889286 - 5889092
Alignment:
Q  9 atcatcaaagtaaatcatattcattacgacagcaagacaacatcatttaaacatatacaacaagtaaccatcattaataatcttcatatataacaattac 108  Q
    |||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||| ||||||||||||| ||||||||||||| |||||||||| |    
T  5889286 atcatcaaagtaaatcatattcatcacgacag-aagacaacatcatttaaacatatacagcaagtaaccatcaataataatcttcatgtataacaattgc 5889188  T
Q  109 aacttcatatcaacaactttcacatagtatagatcttttcacatttaatcatcaacgtaaatcaacaatattaaatcatcttagtcatcctctctg 204  Q
    |||| ||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||    
T  5889187 aactacatatcaacaactttcacattatatagatcttttcacatttaatcatcaacgtaaatcaacaatattaaatcatcataatcatcctctctg 5889092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 27 - 204
Target Start/End: Complemental strand, 12122378 - 12122202
Alignment:
Q  27 attcattacgacagcaagacaacatcatttaaacatatacaacaagtaaccatcattaataatcttcatatataacaattacaacttcatatcaacaact 126  Q
    |||||| || ||||||||||| |||||||||||||||| |  ||||| ||||||| |||||||| |||||||||||||||||||||||||||||||  ||    
T  12122378 attcatcacaacagcaagacatcatcatttaaacatatgccgcaagtcaccatcaataataatcatcatatataacaattacaacttcatatcaacgtct 12122279  T
Q  127 ttcacatagtatagatcttttcacatttaatcatcaacgtaaatcaacaatattaaatcatcttagtcatcctctctg 204  Q
    ||||||   |||| || |||||||||||||||||||| ||||||||  |||||| |||||||||| ||||||||||||    
T  12122278 ttcacaatatataaatattttcacatttaatcatcaaagtaaatcattaatatt-aatcatcttattcatcctctctg 12122202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 37 - 204
Target Start/End: Complemental strand, 21557892 - 21557726
Alignment:
Q  37 acagcaagacaacatcatttaaacatatacaacaagtaaccatcattaataatcttcatatataacaattacaacttcatatcaacaactttcacatagt 136  Q
    |||||||||||||||||||||||||||| || ||||| || |||| |||||||| |||||||||||||||||||||||||||||||  ||||||||   |    
T  21557892 acagcaagacaacatcatttaaacatatgcagcaagtcactatcaataataatcatcatatataacaattacaacttcatatcaacgtctttcacaatat 21557793  T
Q  137 atagatcttttcacatttaatcatcaacgtaaatcaacaatattaaatcatcttagtcatcctctctg 204  Q
    ||| || ||||||||||||||||||||  |||| || ||||||| |||||||||| ||||||||||||    
T  21557792 ataaatattttcacatttaatcatcaaactaaaacatcaatatt-aatcatcttattcatcctctctg 21557726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 27 - 204
Target Start/End: Complemental strand, 21555236 - 21555060
Alignment:
Q  27 attcattacgacagcaagacaacatcatttaaacatatacaacaagtaaccatcattaataatcttcatatataacaattacaacttcatatcaacaact 126  Q
    |||||| || |||||||||||||||||||||||||||| || ||||| ||||||| |||||||| |||||||||||||||||||||| || |||||  ||    
T  21555236 attcatcacaacagcaagacaacatcatttaaacatatgcagcaagtcaccatcaataataatcatcatatataacaattacaactttatgtcaacgtct 21555137  T
Q  127 ttcacatagtatagatcttttcacatttaatcatcaacgtaaatcaacaatattaaatcatcttagtcatcctctctg 204  Q
    ||||||   |||| || ||||||||||||||||||||  |||| || ||||||| |||||||||| ||||||||||||    
T  21555136 ttcacaatatataaatattttcacatttaatcatcaaactaaaacatcaatatt-aatcatcttattcatcctctctg 21555060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 10 - 125
Target Start/End: Complemental strand, 21741653 - 21741538
Alignment:
Q  10 tcatcaaagtaaatcatattcattacgacagcaagacaacatcatttaaacatatacaacaagtaaccatcattaataatcttcatatataacaattaca 109  Q
    |||||||| | |||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||  |    
T  21741653 tcatcaaattcaatcatatacatcacgacagcaagacaacatcatttaaacatatacaacaagtaaccatcattaataatcttcatgtataacaatttaa 21741554  T
Q  110 acttcatatcaacaac 125  Q
    ||||| ||||||||||    
T  21741553 acttcttatcaacaac 21741538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 37 - 204
Target Start/End: Original strand, 30615761 - 30615926
Alignment:
Q  37 acagcaagacaacatcatttaaacatatacaacaagtaaccatcattaataatcttcatatataacaattacaacttcatatcaacaactttcacatagt 136  Q
    ||||||||||| |||| ||||||||||| || ||||| |||||||||||||||| |||  ||||||||||||||||||||||||||  ||||||||   |    
T  30615761 acagcaagacatcatcgtttaaacatatgcagcaagtcaccatcattaataatcatcaattataacaattacaacttcatatcaacgtctttcacaatat 30615860  T
Q  137 atagatcttttcacatttaatcatcaacgtaaatcaacaatattaaatcatcttagtcatcctctctg 204  Q
    ||| || ||||||||||||||||| || |||||| | ||||||| |||||||||| ||||||||||||    
T  30615861 ata-atattttcacatttaatcataaaagtaaattatcaatatt-aatcatcttattcatcctctctg 30615926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 46 - 191
Target Start/End: Original strand, 24212382 - 24212526
Alignment:
Q  46 caacatcatttaaacatatacaacaagtaaccatcattaataatcttcatatataacaattacaacttcatatcaacaactttcacatagtatagatctt 145  Q
    |||||||||||| |||||| || ||||| ||||||| || ||||| |||||||||||||||||||||||||||||||  ||||||||   |||| || ||    
T  24212382 caacatcatttagacatatgcagcaagtcaccatcaatattaatcatcatatataacaattacaacttcatatcaacgtctttcacaatatataaatatt 24212481  T
Q  146 ttcacatttaatcatcaacgtaaatcaacaatattaaatcatctta 191  Q
    |||||||||||||||||| |||||||| ||||||| ||||||||||    
T  24212482 ttcacatttaatcatcaaagtaaatcatcaatatt-aatcatctta 24212526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 28 - 202
Target Start/End: Original strand, 31455686 - 31455862
Alignment:
Q  28 ttcattacgacagcaagacaacatcatttaaacatatacaacaagtaaccatcattaataatc---ttcatatataacaattacaacttcatatcaacaa 124  Q
    ||||| || |||||||||||||||||||||||||||| || ||||| ||||||| ||||||||    |||| |||||| |||||||||||||||||||      
T  31455686 ttcatcacaacagcaagacaacatcatttaaacatatgcagcaagtcaccatcaataataatcaatatcatttataacgattacaacttcatatcaacgt 31455785  T
Q  125 ctttcacatagtatagatcttttcacatttaatcatcaacgtaaatcaacaatattaaatcatcttagtcatcctctc 202  Q
     |||||||   |||| || |||||||||||||||||||| ||||| || ||||||| |||||||||| ||||||||||    
T  31455786 ttttcacaatatataaatattttcacatttaatcatcaaagtaaaacatcaatatt-aatcatcttattcatcctctc 31455862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 28 - 202
Target Start/End: Original strand, 31455073 - 31455249
Alignment:
Q  28 ttcattacgacagcaagacaacatcatttaaacatatacaacaagtaaccatcattaataatc---ttcatatataacaattacaacttcatatcaacaa 124  Q
    ||||| || |||||||||||||||||||||||||||| || ||||| ||||||| ||||||||    |||| |||||| |||||||||| ||||||||      
T  31455073 ttcatcacaacagcaagacaacatcatttaaacatatgcatcaagtcaccatcaataataatcaatatcatttataacgattacaacttaatatcaacgt 31455172  T
Q  125 ctttcacatagtatagatcttttcacatttaatcatcaacgtaaatcaacaatattaaatcatcttagtcatcctctc 202  Q
     |||||||   |||| || |||||||||||||||||||| ||||| || ||||||| |||||||||| ||||||||||    
T  31455173 ttttcacaatatataaatattttcacatttaatcatcaaagtaaaacatcaatatt-aatcatcttattcatcctctc 31455249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 46 - 191
Target Start/End: Original strand, 35852637 - 35852781
Alignment:
Q  46 caacatcatttaaacatatacaacaagtaaccatcattaataatcttcatatataacaattacaacttcatatcaacaactttcacatagtatagatctt 145  Q
    ||||| |||||| |||||| || ||||  ||||||| |||||||| || |||||||||||||||| |||||||||||  ||||||||   |||| || ||    
T  35852637 caacaccatttagacatatgcagcaagccaccatcaataataatcatcgtatataacaattacaatttcatatcaacgtctttcacaatatataaatatt 35852736  T
Q  146 ttcacatttaatcatcaacgtaaatcaacaatattaaatcatctta 191  Q
    |||||||||||||||||| |||||||| ||||||| ||||||||||    
T  35852737 ttcacatttaatcatcaaagtaaatcatcaatatt-aatcatctta 35852781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 40 - 204
Target Start/End: Original strand, 36460178 - 36460341
Alignment:
Q  40 gcaagacaacatcatttaaacatatacaacaagtaaccatcattaataatcttcatatataacaattacaacttcatatcaacaactttcacatagtata 139  Q
    ||||||||||| |||| ||  |||| || ||||| | ||| | |||||||| ||||||||||||||||||| |||||||||||  ||||||||   ||||    
T  36460178 gcaagacaacaccattaaataatatgcagcaagtcaacattaataataatcatcatatataacaattacaatttcatatcaacgtctttcacaatatata 36460277  T
Q  140 gatcttttcacatttaatcatcaacgtaaatcaacaatattaaatcatcttagtcatcctctctg 204  Q
     || |||||||||||||||||||| |||||||| || |||| |||||||||  ||||||||||||    
T  36460278 aatattttcacatttaatcatcaaagtaaatcatcattatt-aatcatcttgttcatcctctctg 36460341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 37 - 122
Target Start/End: Original strand, 17875219 - 17875304
Alignment:
Q  37 acagcaagacaacatcatttaaacatatacaacaagtaaccatcattaataatcttcatatataacaattacaacttcatatcaac 122  Q
    ||||||||| || ||||||||||||||| || ||||| ||||||| |||||||| |||||||||||||||| ||||||||||||||    
T  17875219 acagcaagataatatcatttaaacatatgcagcaagtcaccatcaataataatcatcatatataacaattagaacttcatatcaac 17875304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 84 - 172
Target Start/End: Complemental strand, 5889357 - 5889270
Alignment:
Q  84 aataatcttcatatataacaattacaacttcatatcaacaactttcacatagtatagatcttttcacatttaatcatcaacgtaaatca 172  Q
    ||||||| ||| ||| ||| ||||||||||||||||| || ||||||||   |||| || || ||||| ||||||||||| ||||||||    
T  5889357 aataatcatcaaatacaaccattacaacttcatatcagcatctttcacaatatataaatattctcaca-ttaatcatcaaagtaaatca 5889270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 145; Significance: 2e-76; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 12 - 204
Target Start/End: Original strand, 13844552 - 13844744
Alignment:
Q  12 atcaaagtaaatcatattcattacgacagcaagacaacatcatttaaacatatacaacaagtaaccatcattaataatcttcatatataacaattacaac 111  Q
    ||||||||||||||||||||| || |||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| || ||||    
T  13844552 atcaaagtaaatcatattcatcacaacagtaagacaacatcatttaaacatatacaacaagtaaccatcaataataatcttcatatataacatttgcaac 13844651  T
Q  112 ttcatatcaacaactttcacatagtatagatcttttcacatttaatcatcaacgtaaatcaacaatattaaatcatcttagtcatcctctctg 204  Q
    | ||||||||||||||||||||  ||||||| |||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||    
T  13844652 tccatatcaacaactttcacattatatagatattttcacatttaatcatcaacgtaaatcaataatattaaatcatcttaatcatcctctctg 13844744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 9 - 204
Target Start/End: Original strand, 46642844 - 46643038
Alignment:
Q  9 atcatcaaagtaaatcatattcattacgacagcaagacaacatcatttaaacatatacaacaagtaaccatcattaataatcttcatatataacaattac 108  Q
    ||||||||| |||||||||||||| || |||||||| || |||||||||||||||||||||||||||||| || ||||| ||||||||| ||||||||||    
T  46642844 atcatcaaattaaatcatattcatcacaacagcaaggcagcatcatttaaacatatacaacaagtaaccaccaataatattcttcatatgtaacaattac 46642943  T
Q  109 aacttcatatcaacaactttcacatagtatagatcttttcacatttaatcatcaacgtaaatcaacaatattaaatcatcttagtcatcctctctg 204  Q
    |||||||||| |||||||||||||   |||| |||||||| || |||||||||||| | || ||||||||||||||||||||||||||||||||||    
T  46642944 aacttcatattaacaactttcacaatatataaatcttttcgca-ttaatcatcaactttaaacaacaatattaaatcatcttagtcatcctctctg 46643038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 10 - 125
Target Start/End: Original strand, 15099349 - 15099464
Alignment:
Q  10 tcatcaaagtaaatcatattcattacgacagcaagacaacatcatttaaacatatacaacaagtaaccatcattaataatcttcatatataacaattaca 109  Q
    |||||||||| |||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||| || |||||||||| ||    
T  15099349 tcatcaaagtcaatcatattcattacgacagcaagacaacatcttttaaacatatacagcaagtaaccatcattaataatctttatgtataacaatttca 15099448  T
Q  110 acttcatatcaacaac 125  Q
    ||||||||||||||||    
T  15099449 acttcatatcaacaac 15099464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 27 - 204
Target Start/End: Original strand, 33186097 - 33186273
Alignment:
Q  27 attcattacgacagcaagacaacatcatttaaacatatacaacaagtaaccatcattaataatcttcatatataacaattacaacttcatatcaacaact 126  Q
    |||||| || ||| ||||||| ||||||||||||| || || ||||| ||||||| |||||||| |||||||||||||||||||||||||||||||  ||    
T  33186097 attcatcacaacaacaagacatcatcatttaaacaaatgcagcaagtcaccatcaataataatcatcatatataacaattacaacttcatatcaacgtct 33186196  T
Q  127 ttcacatagtatagatcttttcacatttaatcatcaacgtaaatcaacaatattaaatcatcttagtcatcctctctg 204  Q
    |||| |   |||| || |||||||||||||||||||| ||||||||  |||||| |||||||||| ||||||||||||    
T  33186197 ttcataatatataaatattttcacatttaatcatcaaagtaaatcattaatatt-aatcatcttattcatcctctctg 33186273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 54 - 125
Target Start/End: Original strand, 15190360 - 15190431
Alignment:
Q  54 tttaaacatatacaacaagtaaccatcattaataatcttcatatataacaattacaacttcatatcaacaac 125  Q
    |||||||||||||| ||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||    
T  15190360 tttaaacatatacagcaagtaaccatcattaataatcttcatgtataacaatttcaacttcatatcaacaac 15190431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 52 - 180
Target Start/End: Original strand, 15880717 - 15880845
Alignment:
Q  52 catttaaacatatacaacaagtaaccatcattaataatcttcatatataacaattacaacttcatatcaacaactttcacatagtatagatcttttcaca 151  Q
    |||||| ||||||  | ||||| ||||||| |||||||| ||||||||||||||||||| |||||||||||  ||||||||   |||| || ||||||||    
T  15880717 catttagacatatgtagcaagtcaccatcaataataatcatcatatataacaattacaatttcatatcaacgtctttcacaatatataaatattttcaca 15880816  T
Q  152 tttaatcatcaacgtaaatcaacaatatt 180  Q
    |||||| ||||| |||||||| |||||||    
T  15880817 tttaataatcaaagtaaatcatcaatatt 15880845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 37 - 204
Target Start/End: Complemental strand, 35812336 - 35812171
Alignment:
Q  37 acagcaagacaacatcatttaaacatatacaacaagtaaccatcattaataatcttcatatataacaattacaacttcatatcaacaactttcacatagt 136  Q
    |||||||||||||||||||  |  |||| || ||||| | |||||  ||||||| ||  ||||||| |||||||||||||||||||| ||||||||   |    
T  35812336 acagcaagacaacatcattagataatatgcagcaagtcaacatcaacaataatcatccaatataaccattacaacttcatatcaacatctttcacaatat 35812237  T
Q  137 atagatcttttcacatttaatcatcaacgtaaatcaacaatattaaatcatcttagtcatcctctctg 204  Q
    ||| ||| || ||||||||||||||||| |||||| |||| ||| |||||||||| | || |||||||    
T  35812236 ataaatc-ttccacatttaatcatcaacttaaatccacaacatt-aatcatcttatttatactctctg 35812171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 34 - 182
Target Start/End: Original strand, 9923299 - 9923446
Alignment:
Q  34 acgacagcaagacaacatcatttaaacatatacaacaagtaaccatcattaataatcttcatatataacaattacaacttcatatcaacaactttcacat 133  Q
    ||||||||||| || || |||| ||  |||| || ||||| | |||||  ||||||| ||  ||||||| |||||||||||||||||||| ||||||||     
T  9923299 acgacagcaaggcagcaccattaaataatatgcagcaagtcaacatcaacaataatcatccaatataaccattacaacttcatatcaacatctttcacaa 9923398  T
Q  134 agtatagatcttttcacatttaatcatcaacgtaaatcaacaatattaa 182  Q
      |||| ||| |||||||||||||||||||| |||||| |||| |||||    
T  9923399 tatataaatc-tttcacatttaatcatcaacttaaatccacaacattaa 9923446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 96 - 182
Target Start/End: Complemental strand, 11479498 - 11479413
Alignment:
Q  96 atataacaattacaacttcatatcaacaactttcacatagtatagatcttttcacatttaatcatcaacgtaaatcaacaatattaa 182  Q
    ||||||| |||||||||||||||||||| ||||||||   |||| ||| |||||||||||||||||||| |||||| |||| |||||    
T  11479498 atataaccattacaacttcatatcaacatctttcacaatatataaatc-tttcacatttaatcatcaacttaaatccacaacattaa 11479413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 84 - 172
Target Start/End: Original strand, 46642773 - 46642860
Alignment:
Q  84 aataatcttcatatataacaattacaacttcatatcaacaactttcacatagtatagatcttttcacatttaatcatcaacgtaaatca 172  Q
    ||||||| ||| ||||||| |||||||||||||||||||  ||||||||   |||| ||||| ||||| |||||||||||  |||||||    
T  46642773 aataatcatcaaatataaccattacaacttcatatcaacgtctttcacagtttataaatcttctcaca-ttaatcatcaaattaaatca 46642860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 55
Target Start/End: Complemental strand, 15868811 - 15868765
Alignment:
Q  9 atcatcaaagtaaatcatattcattacgacagcaagacaacatcatt 55  Q
    |||||||||||||||||||||||| || ||| ||| |||||||||||    
T  15868811 atcatcaaagtaaatcatattcatcacaacaacaaaacaacatcatt 15868765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 34 - 132
Target Start/End: Original strand, 19609474 - 19609572
Alignment:
Q  34 acgacagcaagacaacatcatttaaacatatacaacaagtaaccatcattaataatcttcatatataacaattacaacttcatatcaacaactttcaca 132  Q
    ||||||||||| || || |||| ||  ||||  ||||||| | |||||  ||||||| ||  ||||||| |||||||||||||||||||| ||||||||    
T  19609474 acgacagcaaggcagcaccattaaataatatgtaacaagtcaacatcaacaataatcatccaatataaccattacaacttcatatcaacatctttcaca 19609572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 104 - 172
Target Start/End: Complemental strand, 52873319 - 52873252
Alignment:
Q  104 attacaacttcatatcaacaactttcacatagtatagatcttttcacatttaatcatcaacgtaaatca 172  Q
    |||||||||||||||||||| ||||||||   |||| || || ||||| ||||||||||| ||||||||    
T  52873319 attacaacttcatatcaacatctttcacaatatataaatattctcaca-ttaatcatcaaagtaaatca 52873252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 144; Significance: 7e-76; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 9 - 204
Target Start/End: Complemental strand, 28194560 - 28194365
Alignment:
Q  9 atcatcaaagtaaatcatattcattacgacagcaagacaacatcatttaaacatatacaacaagtaaccatcattaataatcttcatatataacaattac 108  Q
    |||||||||||||||||||||||| || ||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||| || |    
T  28194560 atcatcaaagtaaatcatattcatcacaacagcaagacaacatcatttaaacatatacagcaagtaaccatcaataataatcttcatatataacatttgc 28194461  T
Q  109 aacttcatatcaacaactttcacatagtatagatcttttcacatttaatcatcaacgtaaatcaacaatattaaatcatcttagtcatcctctctg 204  Q
    |||| ||||||||||||||||||||  ||||||| ||||||||||||||||||||||||||||||||||||||||||||| || ||||| ||||||    
T  28194460 aactacatatcaacaactttcacattatatagattttttcacatttaatcatcaacgtaaatcaacaatattaaatcatcctaatcatcttctctg 28194365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 9 - 204
Target Start/End: Original strand, 43697383 - 43697578
Alignment:
Q  9 atcatcaaagtaaatcatattcattacgacagcaagacaacatcatttaaacatatacaacaagtaaccatcattaataatcttcatatataacaattac 108  Q
    ||||||||||||||||||||| || || ||||||||||| |||||| |||||||||||| |||||||||| || ||||||||||||||||||||| || |    
T  43697383 atcatcaaagtaaatcatatttatcacaacagcaagacagcatcatataaacatatacagcaagtaaccaacaataataatcttcatatataacatttgc 43697482  T
Q  109 aacttcatatcaacaactttcacatagtatagatcttttcacatttaatcatcaacgtaaatcaacaatattaaatcatcttagtcatcctctctg 204  Q
    |||| |||||||||||||||||||   ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||    
T  43697483 aactccatatcaacaactttcacactatatagatcttttcacatttaatcatcaacttaaatcaacaatattaaatcatcttaatcatcctctctg 43697578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 10 - 125
Target Start/End: Original strand, 49261340 - 49261455
Alignment:
Q  10 tcatcaaagtaaatcatattcattacgacagcaagacaacatcatttaaacatatacaacaagtaaccatcattaataatcttcatatataacaattaca 109  Q
    ||||||||||||||||||||||| ||||||||||||||  |||||||||||||||| ||||||||||||||| ||||||||||||| |||||||||||||    
T  49261340 tcatcaaagtaaatcatattcatcacgacagcaagacagtatcatttaaacatatataacaagtaaccatcaataataatcttcatgtataacaattaca 49261439  T
Q  110 acttcatatcaacaac 125  Q
    ||||||||||||||||    
T  49261440 acttcatatcaacaac 49261455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 10 - 125
Target Start/End: Original strand, 20636849 - 20636964
Alignment:
Q  10 tcatcaaagtaaatcatattcattacgacagcaagacaacatcatttaaacatatacaacaagtaaccatcattaataatcttcatatataacaattaca 109  Q
    ||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||| ||||||| ||||| |||||||||||||    
T  20636849 tcatcaaagaaaatcatattcatcacgacagcaagacaacatcatttaaacatatacagcaagtaaccatcaataataatattcatgtataacaattaca 20636948  T
Q  110 acttcatatcaacaac 125  Q
    ||||||| ||||||||    
T  20636949 acttcatgtcaacaac 20636964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 10 - 125
Target Start/End: Complemental strand, 35981808 - 35981693
Alignment:
Q  10 tcatcaaagtaaatcatattcattacgacagcaagacaacatcatttaaacatatacaacaagtaaccatcattaataatcttcatatataacaattaca 109  Q
    |||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |  ||||||| ||    
T  35981808 tcatcaaagtcaatcatattcatcacgacagcaagacaacatcatttaaacatatacaacaagtaaccatcattagtaatcttcatgtgcaacaatttca 35981709  T
Q  110 acttcatatcaacaac 125  Q
    ||||||||||||||||    
T  35981708 acttcatatcaacaac 35981693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 27 - 182
Target Start/End: Complemental strand, 51274445 - 51274290
Alignment:
Q  27 attcattacgacagcaagacaacatcatttaaacatatacaacaagtaaccatcattaataatcttcatatataacaattacaacttcatatcaacaact 126  Q
    |||||| || ||| ||| |||| | ||||||||||||| || ||||| ||||||| |||||||| || ||||||||||||||||||||||||||||| ||    
T  51274445 attcatcacaacaacaaaacaaaaacatttaaacatatgcatcaagtcaccatcaataataatcatcttatataacaattacaacttcatatcaacatct 51274346  T
Q  127 ttcacatagtatagatcttttcacatttaatcatcaacgtaaatcaacaatattaa 182  Q
    ||||||   |||| || |||||||||||||||||||| |||||||| |||||||||    
T  51274345 ttcacaatatataaatattttcacatttaatcatcaaagtaaatcatcaatattaa 51274290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 69 - 202
Target Start/End: Complemental strand, 12328670 - 12328538
Alignment:
Q  69 caagtaaccatcattaataatcttcatatataacaattacaacttcatatcaacaactttcacatagtatagatcttttcacatttaatcatcaacgtaa 168  Q
    ||||| ||||||| |||||||| |||||||||||||||||| ||||||||||||  ||||||||   |||| || |||||| ||||||||||||| ||||    
T  12328670 caagtcaccatcaataataatcatcatatataacaattacatcttcatatcaacgtctttcacaatatataaatattttcaaatttaatcatcaaagtaa 12328571  T
Q  169 atcaacaatattaaatcatcttagtcatcctctc 202  Q
    |||| ||||||| |||||||||| ||||||||||    
T  12328570 atcatcaatatt-aatcatcttattcatcctctc 12328538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 87 - 191
Target Start/End: Original strand, 8885452 - 8885555
Alignment:
Q  87 aatcttcatatataacaattacaacttcatatcaacaactttcacatagtatagatcttttcacatttaatcatcaacgtaaatcaacaatattaaatca 186  Q
    |||| |||||||| |||||||||| |||||||||||  ||||||||   |||| || |||||||||||||||||||| |||||||| ||||||| |||||    
T  8885452 aatcatcatatattacaattacaatttcatatcaacgtctttcacaatatataaatattttcacatttaatcatcaaagtaaatcatcaatatt-aatca 8885550  T
Q  187 tctta 191  Q
    |||||    
T  8885551 tctta 8885555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 83 - 163
Target Start/End: Original strand, 51326894 - 51326974
Alignment:
Q  83 taataatcttcatatataacaattacaacttcatatcaacaactttcacatagtatagatcttttcacatttaatcatcaa 163  Q
    ||||||||  ||||||||||||||||||||||||||||||  |||||| |   |||| || | ||||||||||||||||||    
T  51326894 taataatcaacatatataacaattacaacttcatatcaacgtctttcataatatataaatatgttcacatttaatcatcaa 51326974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 84 - 172
Target Start/End: Complemental strand, 28194631 - 28194544
Alignment:
Q  84 aataatcttcatatataacaattacaacttcatatcaacaactttcacatagtatagatcttttcacatttaatcatcaacgtaaatca 172  Q
    ||||||| ||| ||| ||| |||||||||||||||||||| ||||||||   |||| || || ||||| ||||||||||| ||||||||    
T  28194631 aataatcatcaaatacaaccattacaacttcatatcaacatctttcacaatatataaatattctcaca-ttaatcatcaaagtaaatca 28194544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 104 - 172
Target Start/End: Original strand, 43543069 - 43543136
Alignment:
Q  104 attacaacttcatatcaacaactttcacatagtatagatcttttcacatttaatcatcaacgtaaatca 172  Q
    |||||||||||||||||||| ||||||||   |||| || || ||||| ||||||||||| ||||||||    
T  43543069 attacaacttcatatcaacatctttcacaatatataaatattctcaca-ttaatcatcaaagtaaatca 43543136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 104 - 175
Target Start/End: Complemental strand, 46382717 - 46382649
Alignment:
Q  104 attacaacttcatatcaacaactttcacatagtatagatcttttcacatttaatcatcaacgtaaatcaaca 175  Q
    |||||||||||||||||||| |||||||  | |||| || || ||||| ||||||||||| |||||||||||    
T  46382717 attacaacttcatatcaacatctttcac--aatataaatattctcaca-ttaatcatcaaagtaaatcaaca 46382649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 136; Significance: 4e-71; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 65 - 204
Target Start/End: Original strand, 15439318 - 15439457
Alignment:
Q  65 acaacaagtaaccatcattaataatcttcatatataacaattacaacttcatatcaacaactttcacatagtatagatcttttcacatttaatcatcaac 164  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15439318 acaacaagtaaccatcaataataatcttcatatataacaattacaacttcatatcaacaactttcacatagtatagatcttttcacatttaatcatcaac 15439417  T
Q  165 gtaaatcaacaatattaaatcatcttagtcatcctctctg 204  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  15439418 gtaaatcaacaatattaaatcatcttagtcatcctctctg 15439457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 10 - 125
Target Start/End: Complemental strand, 9389817 - 9389702
Alignment:
Q  10 tcatcaaagtaaatcatattcattacgacagcaagacaacatcatttaaacatatacaacaagtaaccatcattaataatcttcatatataacaattaca 109  Q
    |||||||||| |||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||| ||||| ||    
T  9389817 tcatcaaagtcaatcatattcatcacgacagcaagacaacatcatttaaacatatacagcaagtaaccatcattaataatcttcatgtatatcaatttca 9389718  T
Q  110 acttcatatcaacaac 125  Q
    ||||||||||||||||    
T  9389717 acttcatatcaacaac 9389702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 27 - 204
Target Start/End: Complemental strand, 30821113 - 30820937
Alignment:
Q  27 attcattacgacagcaagacaacatcatttaaacatatacaacaagtaaccatcattaataatcttcatatataacaattacaacttcatatcaacaact 126  Q
    |||||| || ||| |||||||||||||||||||||||| || ||||| ||||||| |||||||| |||||||||||||||||||||||||||||||   |    
T  30821113 attcatcacaacaacaagacaacatcatttaaacatatgcagcaagttaccatcaataataatcatcatatataacaattacaacttcatatcaacgtat 30821014  T
Q  127 ttcacatagtatagatcttttcacatttaatcatcaacgtaaatcaacaatattaaatcatcttagtcatcctctctg 204  Q
    ||||||   |||| || |||||||||||||||||||| ||||| || ||||||| |||||||||| ||||||||||||    
T  30821013 ttcacaatatataaatattttcacatttaatcatcaaagtaaaacatcaatatt-aatcatcttattcatcctctctg 30820937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 9 - 127
Target Start/End: Original strand, 17232631 - 17232749
Alignment:
Q  9 atcatcaaagtaaatcatattcattacgacagcaagacaacatcatttaaacatatacaacaagtaaccatcattaataatcttcatatataacaattac 108  Q
    |||||||||||||||||||||||| || |||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| || |    
T  17232631 atcatcaaagtaaatcatattcatcacaacagcatgacatcatcatttaaacatatacaacaagtaaccatcattaataatcttcatatgtaacatttgc 17232730  T
Q  109 aacttcatatcaacaactt 127  Q
    |||| ||||||||||||||    
T  17232731 aactccatatcaacaactt 17232749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 27 - 201
Target Start/End: Complemental strand, 36686107 - 36685934
Alignment:
Q  27 attcattacgacagcaagacaacatcatttaaacatatacaacaagtaaccatcattaataatcttcatatataacaattacaacttcatatcaacaact 126  Q
    |||||| || |||||||||||||||||||||||||||| || ||||| ||||||| |||||||| |||||||||||||||| |||||||||||| |  ||    
T  36686107 attcatcacaacagcaagacaacatcatttaaacatatgcagcaagtcaccatcaataataatcatcatatataacaattaaaacttcatatcagcgtct 36686008  T
Q  127 ttcacatagtatagatcttttcacatttaatcatcaacgtaaatcaacaatattaaatcatcttagtcatcctct 201  Q
    ||||||   |||| || |||||||||||||||||||| ||||| || ||||||| |||||||||| |||||||||    
T  36686007 ttcacaatatataaatattttcacatttaatcatcaaagtaaaacatcaatatt-aatcatcttattcatcctct 36685934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 84 - 204
Target Start/End: Complemental strand, 37727727 - 37727607
Alignment:
Q  84 aataatcttcatatataacaattacaacttcatatcaacaactttcacatagtatagatcttttcacatttaatcatcaacgtaaatcaacaatattaaa 183  Q
    ||||||| ||| ||| ||| |||||||||||||||| |||||||||||||  |||||||||||||||||||||||||||||||||| |||||||||||||    
T  37727727 aataatcatcaaatacaaccattacaacttcatatctacaactttcacattatatagatcttttcacatttaatcatcaacgtaaagcaacaatattaaa 37727628  T
Q  184 tcatcttagtcatcctctctg 204  Q
    |||||||| ||||||||||||    
T  37727627 tcatcttaatcatcctctctg 37727607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 27 - 171
Target Start/End: Original strand, 38480232 - 38480376
Alignment:
Q  27 attcattacgacagcaagacaacatcatttaaacatatacaacaagtaaccatcattaataatcttcatatataacaattacaacttcatatcaacaact 126  Q
    |||||| || ||||||||||||||||||||||| |||| || ||||| ||||||| |||||||| |||||||||||||||||||||||||||||||  ||    
T  38480232 attcatcacaacagcaagacaacatcatttaaatatatgcagcaagtcaccatcaataataatcatcatatataacaattacaacttcatatcaacgtct 38480331  T
Q  127 ttcacatagtatagatcttttcacatttaatcatcaacgtaaatc 171  Q
    ||||||   |||| || |||||||||||||||||||| |||||||    
T  38480332 ttcacaatatataaatattttcacatttaatcatcaaagtaaatc 38480376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 46 - 204
Target Start/End: Original strand, 11092751 - 11092908
Alignment:
Q  46 caacatcatttaaacatatacaacaagtaaccatcattaataatcttcatatataacaattacaacttcatatcaacaactttcacatagtatagatctt 145  Q
    ||||| ||||||||| ||| |||||||| ||||||| |||||||| ||||||||||||||||||| |||||||||||| ||||||||   |||| || ||    
T  11092751 caacaccatttaaacgtatgcaacaagtcaccatcaataataatcatcatatataacaattacaatttcatatcaacatctttcacaatatataaatatt 11092850  T
Q  146 ttcacatttaatcatcaacgtaaatcaacaatattaaatcatcttagtcatcctctctg 204  Q
    |||||||||||||||||| |||||||| ||||||| |||||||||| |||  |||||||    
T  11092851 ttcacatttaatcatcaaagtaaatcatcaatatt-aatcatcttattcacactctctg 11092908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 46 - 204
Target Start/End: Original strand, 11085013 - 11085170
Alignment:
Q  46 caacatcatttaaacatatacaacaagtaaccatcattaataatcttcatatataacaattacaacttcatatcaacaactttcacatagtatagatctt 145  Q
    ||||| ||||||| | ||| || ||||| ||||||| |||||||| ||||||||||||||||||| |||||||||||  ||||||||   |||| ||  |    
T  11085013 caacaccatttaatcgtatgcagcaagtcaccatcaataataatcatcatatataacaattacaatttcatatcaacgtctttcacaatatataaatagt 11085112  T
Q  146 ttcacatttaatcatcaacgtaaatcaacaatattaaatcatcttagtcatcctctctg 204  Q
    |||||||||||||||||| |||||||| ||||||| |||||||||| ||||||||||||    
T  11085113 ttcacatttaatcatcaaagtaaatcatcaatatt-aatcatcttattcatcctctctg 11085170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 46 - 191
Target Start/End: Complemental strand, 9320567 - 9320423
Alignment:
Q  46 caacatcatttaaacatatacaacaagtaaccatcattaataatcttcatatataacaattacaacttcatatcaacaactttcacatagtatagatctt 145  Q
    ||||| |||||| |||||| |||||||| ||||||| |||||||| ||||||||||||||||||| |||||||||||  ||||||||   |||| || ||    
T  9320567 caacaccatttagacatatgcaacaagtcaccatcaataataatcatcatatataacaattacaatttcatatcaacgtctttcacaatatataaatatt 9320468  T
Q  146 ttcacatttaatcatcaacgtaaatcaacaatattaaatcatctta 191  Q
    ||||||||||||||||||  ||||||| ||||||| ||||||||||    
T  9320467 ttcacatttaatcatcaaaataaatcatcaatatt-aatcatctta 9320423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 9 - 127
Target Start/End: Original strand, 8468437 - 8468548
Alignment:
Q  9 atcatcaaagtaaatcatattcattacgacagcaagacaacatcatttaaacatatacaacaagtaaccatcattaataatcttcatatataacaattac 108  Q
    |||||||||||||||||||||||| || |||||||       ||||||||||||||||||||||||||||||||||||||||||||||| |||||  | |    
T  8468437 atcatcaaagtaaatcatattcatcacaacagcaa-------tcatttaaacatatacaacaagtaaccatcattaataatcttcatatgtaacatctgc 8468529  T
Q  109 aacttcatatcaacaactt 127  Q
    |||| ||||||||||||||    
T  8468530 aactccatatcaacaactt 8468548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 40 - 203
Target Start/End: Original strand, 15213707 - 15213869
Alignment:
Q  40 gcaagacaacatcatttaaacatatacaacaagtaaccatcattaataatcttcatatataacaattacaacttcatatcaacaactttcacatagtata 139  Q
    ||||| ||||| |||| ||  |||| || ||||| | ||||| |||||||| ||||||||||||||||||| ||||||||||   ||||||||   ||||    
T  15213707 gcaaggcaacaccattaaataatatgcagcaagtcaacatcaataataatcatcatatataacaattacaatttcatatcaatgtctttcacaatatata 15213806  T
Q  140 gatcttttcacatttaatcatcaacgtaaatcaacaatattaaatcatcttagtcatcctctct 203  Q
     || |||||||||||||||||||| |||||||| || |||| |||||||||| |||||||||||    
T  15213807 aatattttcacatttaatcatcaaagtaaatcatcattatt-aatcatcttattcatcctctct 15213869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 34 - 132
Target Start/End: Original strand, 12371428 - 12371526
Alignment:
Q  34 acgacagcaagacaacatcatttaaacatatacaacaagtaaccatcattaataatcttcatatataacaattacaacttcatatcaacaactttcaca 132  Q
    ||||||||||| ||||| |||| ||  |||| || ||||| | |||||  ||||||| ||  ||||||| |||||||||||||||||||| ||||||||    
T  12371428 acgacagcaaggcaacaccattaaataatatgcagcaagtcaacatcaacaataatcatccaatataaccattacaacttcatatcaacatctttcaca 12371526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 104 - 175
Target Start/End: Complemental strand, 45847802 - 45847732
Alignment:
Q  104 attacaacttcatatcaacaactttcacatagtatagatcttttcacatttaatcatcaacgtaaatcaaca 175  Q
    |||||||||||||||||||| ||||||||   |||| || || ||||| ||||||||||| |||||||||||    
T  45847802 attacaacttcatatcaacatctttcacaatatataaatattctcaca-ttaatcatcaaagtaaatcaaca 45847732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 172
Target Start/End: Original strand, 8468320 - 8468453
Alignment:
Q  38 cagcaagacaacatcatttaaacatatacaacaagtaaccatcattaataatcttcatatataacaattacaacttcatatcaacaactttcacatagta 137  Q
    ||||||| ||||| |||| ||  || |||| ||||| | |||||  ||||||| ||  ||| ||| |||||||||||||||||||| ||||||||   ||    
T  8468320 cagcaaggcaacaccattaaataatttacagcaagtcaacatcaacaataatcatctaatacaaccattacaacttcatatcaacatctttcacaatata 8468419  T
Q  138 tagatcttttcacatttaatcatcaacgtaaatca 172  Q
    || || || ||||| ||||||||||| ||||||||    
T  8468420 taaatattatcaca-ttaatcatcaaagtaaatca 8468453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 34 - 132
Target Start/End: Complemental strand, 13148374 - 13148276
Alignment:
Q  34 acgacagcaagacaacatcatttaaacatatacaacaagtaaccatcattaataatcttcatatataacaattacaacttcatatcaacaactttcaca 132  Q
    ||||||||||| || || |||| ||  |||| || ||||| | |||||  ||||||| ||  ||||||| |||||||||||||||||||| ||||||||    
T  13148374 acgacagcaaggcagcaccattaaataatatgcagcaagtcaacatcaacaataatcatctaatataaccattacaacttcatatcaacatctttcaca 13148276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 96 - 132
Target Start/End: Original strand, 11066680 - 11066716
Alignment:
Q  96 atataacaattacaacttcatatcaacaactttcaca 132  Q
    ||||||| |||||||||||||||||||| ||||||||    
T  11066680 atataactattacaacttcatatcaacatctttcaca 11066716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 104 - 172
Target Start/End: Complemental strand, 14270206 - 14270139
Alignment:
Q  104 attacaacttcatatcaacaactttcacatagtatagatcttttcacatttaatcatcaacgtaaatca 172  Q
    |||||||||||||||||||| ||||||||   |||| || || ||||| ||||||||||| ||||||||    
T  14270206 attacaacttcatatcaacatctttcacaatatataaatattctcaca-ttaatcatcaaagtaaatca 14270139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 102; Significance: 8e-51; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 27 - 204
Target Start/End: Complemental strand, 31224811 - 31224635
Alignment:
Q  27 attcattacgacagcaagacaacatcatttaaacatatacaacaagtaaccatcattaataatcttcatatataacaattacaacttcatatcaacaact 126  Q
    |||||| || |||||||||||||||||||||||||||| || ||||| ||||||| |||||||| |||||||||||||||||||||||||||||||  ||    
T  31224811 attcatcacaacagcaagacaacatcatttaaacatatgcagcaagtcaccatcaataataatcatcatatataacaattacaacttcatatcaacgtct 31224712  T
Q  127 ttcacatagtatagatcttttcacatttaatcatcaacgtaaatcaacaatattaaatcatcttagtcatcctctctg 204  Q
    |||||||  |||| || |||||||||||||||||||| ||||| || ||||||| |||||||||| ||||||||||||    
T  31224711 ttcacattatataaatattttcacatttaatcatcaaagtaaaacatcaatatt-aatcatcttattcatcctctctg 31224635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 9 - 204
Target Start/End: Original strand, 12269580 - 12269773
Alignment:
Q  9 atcatcaaagtaaatcatattcattacgacagcaagacaacatcatttaaacatatacaacaagtaaccatcattaataatcttcatatataacaattac 108  Q
    ||||||||  |||||||||||||| || |||||||| || |||||||||||||||||||||||||||||| |  ||||| ||||||||| ||| || |||    
T  12269580 atcatcaacttaaatcatattcatgacaacagcaaggcagcatcatttaaacatatacaacaagtaaccaccgataatattcttcatatgtaaaaaatac 12269679  T
Q  109 aacttcatatcaacaactttcacatagtatagatcttttcacatttaatcatcaacgtaaatcaacaatattaaatcatcttagtcatcctctctg 204  Q
    ||||||||||||||||||||||||   |||| |||||||  || |||||||||||| | || ||||||||||||||||||||||||||||||||||    
T  12269680 aacttcatatcaacaactttcacaatatataaatctttt-tca-ttaatcatcaactttaaacaacaatattaaatcatcttagtcatcctctctg 12269773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 27 - 204
Target Start/End: Complemental strand, 15447854 - 15447681
Alignment:
Q  27 attcattacgacagcaagacaacatcatttaaacatatacaacaagtaaccatcattaataatcttcatatataacaattacaacttcatatcaacaact 126  Q
    |||||| || |||||||||||||||||||||||||||| || ||||| ||||||| ||||||||   |||||||||||||||||||||||||||||  ||    
T  15447854 attcatcacaacagcaagacaacatcatttaaacatatgcatcaagtcaccatcaataataatc---atatataacaattacaacttcatatcaacgtct 15447758  T
Q  127 ttcacatagtatagatcttttcacatttaatcatcaacgtaaatcaacaatattaaatcatcttagtcatcctctctg 204  Q
    |||||||  |||  || |||||||||||||||||||| |||||||| ||||||| |||||||||| ||||||||||||    
T  15447757 ttcacattatatgaatattttcacatttaatcatcaaagtaaatcatcaatatt-aatcatcttattcatcctctctg 15447681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 9 - 122
Target Start/End: Complemental strand, 18439958 - 18439845
Alignment:
Q  9 atcatcaaagtaaatcatattcattacgacagcaagacaacatcatttaaacatatacaacaagtaaccatcattaataatcttcatatataacaattac 108  Q
    |||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| || |    
T  18439958 atcatcaaagtaaatcatattcatcacaacagcaagacaacatcatttaaacatatacaacaagtaaccatcaataataatcttcatatataacatttgc 18439859  T
Q  109 aacttcatatcaac 122  Q
    |||| |||||||||    
T  18439858 aactacatatcaac 18439845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 84 - 204
Target Start/End: Complemental strand, 1989032 - 1988912
Alignment:
Q  84 aataatcttcatatataacaattacaacttcatatcaacaactttcacatagtatagatcttttcacatttaatcatcaacgtaaatcaacaatattaaa 183  Q
    ||||||| ||| ||| ||| ||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||| ||||||||||||||||    
T  1989032 aataatcatcaaatacaaccattacaacttcatatcaacaactttcacattatatagatcttttcacatttaatcatcaacgtgaatcaacaatattaaa 1988933  T
Q  184 tcatcttagtcatcctctctg 204  Q
    |||||||| ||||||||||||    
T  1988932 tcatcttaatcatcctctctg 1988912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 10 - 125
Target Start/End: Complemental strand, 1465531 - 1465416
Alignment:
Q  10 tcatcaaagtaaatcatattcattacgacagcaagacaacatcatttaaacatatacaacaagtaaccatcattaataatcttcatatataacaattaca 109  Q
    |||||||||| |||||||||||| ||| |||||||||||||||||||||||||||| | ||||||||||||||||||||||||||| |||||||||| ||    
T  1465531 tcatcaaagtcaatcatattcatcacggcagcaagacaacatcatttaaacatatagagcaagtaaccatcattaataatcttcatgtataacaatttca 1465432  T
Q  110 acttcatatcaacaac 125  Q
    ||||||||||||||||    
T  1465431 acttcatatcaacaac 1465416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 27 - 171
Target Start/End: Original strand, 31415399 - 31415543
Alignment:
Q  27 attcattacgacagcaagacaacatcatttaaacatatacaacaagtaaccatcattaataatcttcatatataacaattacaacttcatatcaacaact 126  Q
    |||||| || |||||||||||||||||||||||||||| || ||||| ||||||| |||||||| |||||||||||||||||||||||||||||||  ||    
T  31415399 attcatcacaacagcaagacaacatcatttaaacatatgcagcaagtcaccatcaataataatcatcatatataacaattacaacttcatatcaacgtct 31415498  T
Q  127 ttcacatagtatagatcttttcacatttaatcatcaacgtaaatc 171  Q
    ||||||   |||| || |||||||||||||||||||| |||||||    
T  31415499 ttcacaatatataaatattttcacatttaatcatcaaagtaaatc 31415543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 21 - 125
Target Start/End: Complemental strand, 49389740 - 49389636
Alignment:
Q  21 aatcatattcattacgacagcaagacaacatcatttaaacatatacaacaagtaaccatcattaataatcttcatatataacaattacaacttcatatca 120  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||| ||||| |||| | |||| |||||||| |||||||||| |||||||||| ||    
T  49389740 aatcatattcatcacgacagcaagacaacatcatttaaacatatacaataagtacccattaataatgatcttcatgtataacaatttcaacttcatacca 49389641  T
Q  121 acaac 125  Q
    |||||    
T  49389640 acaac 49389636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 40 - 204
Target Start/End: Original strand, 11912929 - 11913092
Alignment:
Q  40 gcaagacaacatcatttaaacatatacaacaagtaaccatcattaataatcttcatatataacaattacaacttcatatcaacaactttcacatagtata 139  Q
    ||||| ||||| |||| ||  |||| || ||||| | ||||| |||||||  ||||||||||||||||||| |||||||||||  ||||||||   ||||    
T  11912929 gcaaggcaacaccattaaataatatgcatcaagtcaacatcaataataataatcatatataacaattacaatttcatatcaacgtctttcacaatatata 11913028  T
Q  140 gatcttttcacatttaatcatcaacgtaaatcaacaatattaaatcatcttagtcatcctctctg 204  Q
     || |||||||||||||||||||| |||||||| || |||| |||||||||| ||||||||||||    
T  11913029 aatattttcacatttaatcatcaaagtaaatcatcattatt-aatcatcttattcatcctctctg 11913092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 70 - 182
Target Start/End: Original strand, 6808175 - 6808287
Alignment:
Q  70 aagtaaccatcattaataatcttcatatataacaattacaacttcatatcaacaactttcacatagtatagatcttttcacatttaatcatcaacgtaaa 169  Q
    |||| ||||||| |||||||| | ||||||||||||||||| |||||||||||  ||||||||   |||| || |||||||||||||||||||| |||||    
T  6808175 aagtcaccatcaataataatcattatatataacaattacaatttcatatcaacgtctttcacaatatataaatattttcacatttaatcatcaaagtaaa 6808274  T
Q  170 tcaacaatattaa 182  Q
    ||| |||||||||    
T  6808275 tcatcaatattaa 6808287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 13 - 70
Target Start/End: Complemental strand, 20630204 - 20630147
Alignment:
Q  13 tcaaagtaaatcatattcattacgacagcaagacaacatcatttaaacatatacaaca 70  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  20630204 tcaaagtaaatcatattcattacaacagcaagacaacatcatttaaacatatacaaca 20630147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 84 - 195
Target Start/End: Complemental strand, 49389852 - 49389740
Alignment:
Q  84 aataatcttcatatataacaattacaacttcatatcaacaactttcacatagtat--agatcttttcacatttaatcatcaacgtaaatcaacaatatta 181  Q
    ||||||| ||| |||||||||||||||||||||||||||||||| ||||   |||  | || ||||||||||||||||||||| | || |||||||||||    
T  49389852 aataatcatcaaatataacaattacaacttcatatcaacaactt-cacaatatatctaaatattttcacatttaatcatcaactttaaacaacaatatta 49389754  T
Q  182 aatcatcttagtca 195  Q
    | ||||||||||||    
T  49389753 attcatcttagtca 49389740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 84 - 172
Target Start/End: Complemental strand, 49970052 - 49969964
Alignment:
Q  84 aataatcttcatatataacaattacaacttcatatcaacaactttcacatagtatagatcttttcacatttaatcatcaacgtaaatca 172  Q
    ||||||| ||| ||||||| |||||||||||||||||||| ||||||||   |||| || |||||||||||||||||||| ||||||||    
T  49970052 aataatcatcaaatataaccattacaacttcatatcaacatctttcacaatatataaatattttcacatttaatcatcaaagtaaatca 49969964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 9 - 55
Target Start/End: Complemental strand, 49969980 - 49969934
Alignment:
Q  9 atcatcaaagtaaatcatattcattacgacagcaagacaacatcatt 55  Q
    |||||||||||||||||||||||| || |||| ||||||||||||||    
T  49969980 atcatcaaagtaaatcatattcatcacaacaggaagacaacatcatt 49969934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 84 - 172
Target Start/End: Complemental strand, 18440029 - 18439942
Alignment:
Q  84 aataatcttcatatataacaattacaacttcatatcaacaactttcacatagtatagatcttttcacatttaatcatcaacgtaaatca 172  Q
    ||||||| ||| ||| ||| ||||||||||||||||| || ||||||||   ||||||| || ||||| ||||||||||| ||||||||    
T  18440029 aataatcatcaaatacaaccattacaacttcatatcatcatctttcacaatatatagatattctcaca-ttaatcatcaaagtaaatca 18439942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 34 - 132
Target Start/End: Original strand, 40807146 - 40807244
Alignment:
Q  34 acgacagcaagacaacatcatttaaacatatacaacaagtaaccatcattaataatcttcatatataacaattacaacttcatatcaacaactttcaca 132  Q
    ||||||||||| || || |||| ||  |||| || ||||| | |||||  ||||||| ||  ||||||| |||||||||||||||||||| ||||||||    
T  40807146 acgacagcaaggcagcaccattaaataatatgcagcaagtcaacatcaacaataatcatccaatataaccattacaacttcatatcaacatctttcaca 40807244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 96 - 132
Target Start/End: Original strand, 40812050 - 40812086
Alignment:
Q  96 atataacaattacaacttcatatcaacaactttcaca 132  Q
    ||||||| |||||||||||||||||||| ||||||||    
T  40812050 atataaccattacaacttcatatcaacatctttcaca 40812086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0071 (Bit Score: 98; Significance: 2e-48; HSPs: 1)
Name: scaffold0071
Description:

Target: scaffold0071; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 27 - 204
Target Start/End: Original strand, 14335 - 14511
Alignment:
Q  27 attcattacgacagcaagacaacatcatttaaacatatacaacaagtaaccatcattaataatcttcatatataacaattacaacttcatatcaacaact 126  Q
    |||||| || |||||||||||||||||||||||||||| || ||||| ||||||| |||||||| || ||||||||||||||||||||||||||||  ||    
T  14335 attcatcacaacagcaagacaacatcatttaaacatatgcatcaagtcaccatcaataataatcatcttatataacaattacaacttcatatcaacgtct 14434  T
Q  127 ttcacatagtatagatcttttcacatttaatcatcaacgtaaatcaacaatattaaatcatcttagtcatcctctctg 204  Q
    |||||||  |||  || |||||||||||||||||||| |||||||| ||||||| |||||||||| ||||||||||||    
T  14435 ttcacattatatgaatattttcacatttaatcatcaaagtaaatcatcaatatt-aatcatcttattcatcctctctg 14511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 97; Significance: 8e-48; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 49 - 188
Target Start/End: Original strand, 39833889 - 39834029
Alignment:
Q  49 catcatttaaacatatacaacaagtaaccatcattaataatcttcatatataacaatta-caacttcatatcaacaactttcacatagtatagatctttt 147  Q
    ||||||||||||||||||| | ||||||||||| |||||||||||||||||||| |||  |||||||||||||||||| ||||| |  ||||||||||||    
T  39833889 catcatttaaacatatacagcgagtaaccatcaataataatcttcatatataaccatttgcaacttcatatcaacaacattcacgttatatagatctttt 39833988  T
Q  148 cacatttaatcatcaacgtaaatcaacaatattaaatcatc 188  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  39833989 cacatttaatcatcaacgtaaatcaacaatattaaatcatc 39834029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 27 - 204
Target Start/End: Complemental strand, 21580063 - 21579887
Alignment:
Q  27 attcattacgacagcaagacaacatcatttaaacatatacaacaagtaaccatcattaataatcttcatatataacaattacaacttcatatcaacaact 126  Q
    |||||| || |||||||||||||||||||||||||||| || ||||| ||||||| |||||||  |||||||||||||||||||||||||||||||  ||    
T  21580063 attcatcacaacagcaagacaacatcatttaaacatatgcagcaagtcaccatcaataataattatcatatataacaattacaacttcatatcaacgtct 21579964  T
Q  127 ttcacatagtatagatcttttcacatttaatcatcaacgtaaatcaacaatattaaatcatcttagtcatcctctctg 204  Q
    ||||||   |||| || |||||||||||||||||||| ||||||||  |||||| |||||||||| ||||||||||||    
T  21579963 ttcacaatatataaatattttcacatttaatcatcaaagtaaatcattaatatt-aatcatcttattcatcctctctg 21579887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 27 - 204
Target Start/End: Complemental strand, 29763724 - 29763549
Alignment:
Q  27 attcattacgacagcaagacaacatcatttaaacatatacaacaagtaaccatcattaataatcttcatatataacaattacaacttcatatcaacaact 126  Q
    |||||| || ||||||||||| |||||||||||||||| || ||| | ||||||  |||||||| |||||||||||||||||||||||||||||||  ||    
T  29763724 attcatcacaacagcaagacatcatcatttaaacatatgcagcaa-tcaccatcgataataatcatcatatataacaattacaacttcatatcaacgtct 29763626  T
Q  127 ttcacatagtatagatcttttcacatttaatcatcaacgtaaatcaacaatattaaatcatcttagtcatcctctctg 204  Q
    ||||||   |||| || |||||||||||||||||||| ||||||||  |||||| |||||||||| ||||||||||||    
T  29763625 ttcacaatatataaatattttcacatttaatcatcaaagtaaatcattaatatt-aatcatcttattcatcctctctg 29763549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 27 - 172
Target Start/End: Complemental strand, 41680979 - 41680834
Alignment:
Q  27 attcattacgacagcaagacaacatcatttaaacatatacaacaagtaaccatcattaataatcttcatatataacaattacaacttcatatcaacaact 126  Q
    |||||| || ||| ||||||| || ||||||||||||| || ||||| ||||||| |||||||| ||||||||||||||||||| || ||||||| | ||    
T  41680979 attcatcacaacaacaagacatcaccatttaaacatatgcagcaagtcaccatcaataataatcatcatatataacaattacaatttgatatcaatatct 41680880  T
Q  127 ttcacatagtatagatcttttcacatttaatcatcaacgtaaatca 172  Q
    ||||||   |||| || ||||||||||||||||||||  |||||||    
T  41680879 ttcacaatatataaatattttcacatttaatcatcaatataaatca 41680834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 77 - 204
Target Start/End: Complemental strand, 42560334 - 42560208
Alignment:
Q  77 catcattaataatcttcatatataacaattacaacttcatatcaacaactttcacatagtatagatcttttcacatttaatcatcaacgtaaatcaacaa 176  Q
    ||||| |||||||| ||||||||||||||||||| |||||||||||   |||||||   |||| || |||||||||||||||||||| |||||||| ||     
T  42560334 catcaataataatcatcatatataacaattacaatttcatatcaacgtatttcacaatatataaatattttcacatttaatcatcaaagtaaatcatcat 42560235  T
Q  177 tattaaatcatcttagtcatcctctctg 204  Q
    |||| |||||||||| ||||||||||||    
T  42560234 tatt-aatcatcttattcatcctctctg 42560208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 46 - 163
Target Start/End: Original strand, 32807279 - 32807396
Alignment:
Q  46 caacatcatttaaacatatacaacaagtaaccatcattaataatcttcatatataacaattacaacttcatatcaacaactttcacatagtatagatctt 145  Q
    ||||| |||||| |||||| || ||||| ||||||| |||||||| ||||||||||||||||||| |||||||||||  ||||||||   |||| || ||    
T  32807279 caacaccatttagacatatgcagcaagtcaccatcaataataatcatcatatataacaattacaatttcatatcaacgtctttcacaatatataaatatt 32807378  T
Q  146 ttcacatttaatcatcaa 163  Q
    ||||||||||||||||||    
T  32807379 ttcacatttaatcatcaa 32807396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 84 - 204
Target Start/End: Original strand, 18760587 - 18760706
Alignment:
Q  84 aataatcttcatatataacaattacaacttcatatcaacaactttcacatagtatagatcttttcacatttaatcatcaacgtaaatcaacaatattaaa 183  Q
    ||||||| ||| ||||||| |||| ||||||||||||||| ||||||||   |||| ||||||||||||||||||||| || |||| | |||||||| ||    
T  18760587 aataatcatcaaatataaccattataacttcatatcaacatctttcacaatatataaatcttttcacatttaatcatctacttaaacccacaatatt-aa 18760685  T
Q  184 tcatcttagtcatcctctctg 204  Q
    |||||||| |||| |||||||    
T  18760686 tcatcttattcatactctctg 18760706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 38 - 175
Target Start/End: Complemental strand, 38550219 - 38550083
Alignment:
Q  38 cagcaagacaacatcatttaaacatatacaacaagtaaccatcattaataatcttcatatataacaattacaacttcatatcaacaactttcacatagta 137  Q
    ||||||||||||| |||  ||  || |||| ||||| | |||||  ||||||| ||  ||| ||| |||||||||||||||||||| ||||||||   ||    
T  38550219 cagcaagacaacaccatcaaataatttacagcaagtcaacatcaacaataatcatctaatacaaccattacaacttcatatcaacatctttcacaatata 38550120  T
Q  138 tagatcttttcacatttaatcatcaacgtaaatcaaca 175  Q
    || || || ||||| ||||||||||| |||||||||||    
T  38550119 taaatattctcaca-ttaatcatcaaagtaaatcaaca 38550083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 104 - 204
Target Start/End: Original strand, 3273212 - 3273310
Alignment:
Q  104 attacaacttcatatcaacaactttcacatagtatagatcttttcacatttaatcatcaacgtaaatcaacaatattaaatcatcttagtcatcctctct 203  Q
    |||||||||||||| |||||  |||||||   |||| |||||| ||||||||||||||||| |||||| | || ||| |||||||||| |||| ||||||    
T  3273212 attacaacttcataccaacatttttcacaatatataaatcttt-cacatttaatcatcaacttaaatccataacatt-aatcatcttattcatactctct 3273309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 104 - 175
Target Start/End: Complemental strand, 27472458 - 27472388
Alignment:
Q  104 attacaacttcatatcaacaactttcacatagtatagatcttttcacatttaatcatcaacgtaaatcaaca 175  Q
    |||||||||||||||||||| ||||||||   |||| || || ||||| ||||||||||| |||||||||||    
T  27472458 attacaacttcatatcaacatctttcacaatatataaatattctcaca-ttaatcatcaaagtaaatcaaca 27472388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 37 - 90
Target Start/End: Original strand, 22965754 - 22965807
Alignment:
Q  37 acagcaagacaacatcatttaaacatatacaacaagtaaccatcattaataatc 90  Q
    |||||||||||||| ||||||||||||| || ||| | ||||||| ||||||||    
T  22965754 acagcaagacaacaccatttaaacatatgcatcaaatcaccatcaataataatc 22965807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 96 - 132
Target Start/End: Original strand, 19139977 - 19140013
Alignment:
Q  96 atataacaattacaacttcatatcaacaactttcaca 132  Q
    ||||||| |||||||||||||||||||| ||||||||    
T  19139977 atataaccattacaacttcatatcaacatctttcaca 19140013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 96 - 132
Target Start/End: Complemental strand, 39936850 - 39936814
Alignment:
Q  96 atataacaattacaacttcatatcaacaactttcaca 132  Q
    ||||||| |||||||||||||||||||| ||||||||    
T  39936850 atataaccattacaacttcatatcaacatctttcaca 39936814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 97; Significance: 8e-48; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 39 - 203
Target Start/End: Complemental strand, 24865615 - 24865452
Alignment:
Q  39 agcaagacaacatcatttaaacatatacaacaagtaaccatcattaataatcttcatatataacaattacaacttcatatcaacaactttcacatagtat 138  Q
    |||||||||||||||||||||||||| || ||||| ||||||| |||||||| || ||||||||||||||||||||||||||||| ||||||||   |||    
T  24865615 agcaagacaacatcatttaaacatatgcatcaagtcaccatcaataataatcatcttatataacaattacaacttcatatcaacatctttcacaatatat 24865516  T
Q  139 agatcttttcacatttaatcatcaacgtaaatcaacaatattaaatcatcttagtcatcctctct 203  Q
    | || |||||||||||||||||||| |||||||| ||||||| |||||||||| |||||||||||    
T  24865515 aaatattttcacatttaatcatcaaagtaaatcatcaatatt-aatcatcttattcatcctctct 24865452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 39 - 191
Target Start/End: Original strand, 22500996 - 22501147
Alignment:
Q  39 agcaagacaacatcatttaaacatatacaacaagtaaccatcattaataatcttcatatataacaattacaacttcatatcaacaactttcacatagtat 138  Q
    ||||||||| |||||||||||||||| || ||||| ||||||| || ||||| || ||||||||||||||||||||||||||||  |||||||||  |||    
T  22500996 agcaagacagcatcatttaaacatatgcagcaagttaccatcaatattaatcatcttatataacaattacaacttcatatcaacgtctttcacattatat 22501095  T
Q  139 agatcttttcacatttaatcatcaacgtaaatcaacaatattaaatcatctta 191  Q
    | || |||||||||||||||||||| |||||||| ||||||| ||||||||||    
T  22501096 aaatattttcacatttaatcatcaaagtaaatcatcaatatt-aatcatctta 22501147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 39 - 191
Target Start/End: Original strand, 22508930 - 22509081
Alignment:
Q  39 agcaagacaacatcatttaaacatatacaacaagtaaccatcattaataatcttcatatataacaattacaacttcatatcaacaactttcacatagtat 138  Q
    ||||||||| |||||||||||||||| || ||||| ||||||| || ||||| || ||||||||||||||||||||||||||||  |||||||||  |||    
T  22508930 agcaagacagcatcatttaaacatatgcagcaagttaccatcaatattaatcatcttatataacaattacaacttcatatcaacgtctttcacattatat 22509029  T
Q  139 agatcttttcacatttaatcatcaacgtaaatcaacaatattaaatcatctta 191  Q
    | || |||||||||||||||||||| |||||||| ||||||| ||||||||||    
T  22509030 aaatattttcacatttaatcatcaaagtaaatcatcaatatt-aatcatctta 22509081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 27 - 203
Target Start/End: Complemental strand, 7672409 - 7672240
Alignment:
Q  27 attcattacgacagcaagacaacatcatttaaacatatacaacaagtaaccatcattaataatcttcatatataacaattacaacttcatatcaacaact 126  Q
    |||||| || ||||||||||| |||||||||||| ||| || ||||| ||||||| |||||||| || ||||||||||      ||||||||||||  ||    
T  7672409 attcatcacaacagcaagacagcatcatttaaacgtatgcatcaagtcaccatcaataataatcatcttatataacaa------cttcatatcaacgtct 7672316  T
Q  127 ttcacatagtatagatcttttcacatttaatcatcaacgtaaatcaacaatattaaatcatcttagtcatcctctct 203  Q
    ||||||   |||| || |||||||||||||||||||| |||||||| ||||||| |||||||||| |||||||||||    
T  7672315 ttcacaatatataaatattttcacatttaatcatcaaagtaaatcatcaatatt-aatcatcttattcatcctctct 7672240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 84 - 202
Target Start/End: Original strand, 6576426 - 6576543
Alignment:
Q  84 aataatcttcatatataacaattacaacttcatatcaacaactttcacatagtatagatcttttcacatttaatcatcaacgtaaatcaacaatattaaa 183  Q
    ||||||| ||| ||||||| |||||||||||||||||||| ||||||||   |||| || ||||||| ||||||||||||| |||||| |||| ||| ||    
T  6576426 aataatcatcaaatataaccattacaacttcatatcaacatctttcacaatatataaattttttcacttttaatcatcaacttaaatccacaacatt-aa 6576524  T
Q  184 tcatcttagtcatcctctc 202  Q
    |||||||| |||| |||||    
T  6576525 tcatcttattcatactctc 6576543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 87 - 204
Target Start/End: Complemental strand, 2524526 - 2524410
Alignment:
Q  87 aatcttcatatataacaattacaacttcatatcaacaactttcacatagtatagatcttttcacatttaatcatcaacgtaaatcaacaatattaaatca 186  Q
    |||| |||||| |||||||||||| || ||||||||  ||||||||   |||| || |||||||||||||||||||| |||||||| ||||||| |||||    
T  2524526 aatcatcatatgtaacaattacaatttgatatcaacgtctttcacaatatataaatattttcacatttaatcatcaaagtaaatcatcaatatt-aatca 2524428  T
Q  187 tcttagtcatcctctctg 204  Q
    ||||| |||| |||||||    
T  2524427 tcttattcatactctctg 2524410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 34 - 132
Target Start/End: Complemental strand, 24781742 - 24781644
Alignment:
Q  34 acgacagcaagacaacatcatttaaacatatacaacaagtaaccatcattaataatcttcatatataacaattacaacttcatatcaacaactttcaca 132  Q
    |||||| |||| || ||||||| ||  |||| || ||||| | |||||  ||||||| ||  ||||||| |||||||||||||||||||||||||||||    
T  24781742 acgacatcaaggcagcatcattaaataatatgcagcaagtcaacatcaacaataatcatccaatataaccattacaacttcatatcaacaactttcaca 24781644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 77 - 133
Target Start/End: Original strand, 22501128 - 22501184
Alignment:
Q  77 catcattaataatcttcatatataacaattacaacttcatatcaacaactttcacat 133  Q
    ||||| || ||||| || ||||||||||||||||||||||||||||  |||||||||    
T  22501128 catcaatattaatcatcttatataacaattacaacttcatatcaacgtctttcacat 22501184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 77 - 133
Target Start/End: Original strand, 22509062 - 22509118
Alignment:
Q  77 catcattaataatcttcatatataacaattacaacttcatatcaacaactttcacat 133  Q
    ||||| || ||||| || ||||||||||||||||||||||||||||  |||||||||    
T  22509062 catcaatattaatcatcttatataacaattacaacttcatatcaacgtctttcacat 22509118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 99 - 170
Target Start/End: Original strand, 24436258 - 24436328
Alignment:
Q  99 taacaattacaacttcatatcaacaactttcacatagtatagatcttttcacatttaatcatcaacgtaaat 170  Q
    |||| ||||||| |||||||||||| ||||||||   |||| ||| |||||||||||||||||||| |||||    
T  24436258 taaccattacaatttcatatcaacatctttcacaatatataaatc-tttcacatttaatcatcaacttaaat 24436328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 96 - 132
Target Start/End: Original strand, 24883665 - 24883701
Alignment:
Q  96 atataacaattacaacttcatatcaacaactttcaca 132  Q
    ||||||| |||||||||||||||||||| ||||||||    
T  24883665 atataaccattacaacttcatatcaacatctttcaca 24883701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1137 (Bit Score: 90; Significance: 1e-43; HSPs: 1)
Name: scaffold1137
Description:

Target: scaffold1137; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 10 - 123
Target Start/End: Complemental strand, 2412 - 2299
Alignment:
Q  10 tcatcaaagtaaatcatattcattacgacagcaagacaacatcatttaaacatatacaacaagtaaccatcattaataatcttcatatataacaattaca 109  Q
    |||||||||| |||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| || ||||||| ||    
T  2412 tcatcaaagtcaatcatattcatcacgacagcaagacagcatcatttaaacatatacaacaagtaaccatcattaataatcttcatgtacaacaatttca 2313  T
Q  110 acttcatatcaaca 123  Q
    ||||||||||||||    
T  2312 acttcatatcaaca 2299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1351 (Bit Score: 89; Significance: 5e-43; HSPs: 1)
Name: scaffold1351
Description:

Target: scaffold1351; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 27 - 203
Target Start/End: Original strand, 1561 - 1736
Alignment:
Q  27 attcattacgacagcaagacaacatcatttaaacatatacaacaagtaaccatcattaataatcttcatatataacaattacaacttcatatcaacaact 126  Q
    |||||| || ||| |||||||||||||||||||||||| || ||||| ||||||| |||||||| || ||||||||||||||||||||||||||||  ||    
T  1561 attcatcacaacaacaagacaacatcatttaaacatatgcatcaagtcaccatcaataataatcatcttatataacaattacaacttcatatcaacgtct 1660  T
Q  127 ttcacatagtatagatcttttcacatttaatcatcaacgtaaatcaacaatattaaatcatcttagtcatcctctct 203  Q
    ||||||   |||| || |||||||||||||||||||| |||||||| ||||||| |||||||||| | |||||||||    
T  1661 ttcacaatatataaatattttcacatttaatcatcaaagtaaatcatcaatatt-aatcatcttattaatcctctct 1736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 87; Significance: 7e-42; HSPs: 2)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 9 - 127
Target Start/End: Original strand, 85258 - 85376
Alignment:
Q  9 atcatcaaagtaaatcatattcattacgacagcaagacaacatcatttaaacatatacaacaagtaaccatcattaataatcttcatatataacaattac 108  Q
    |||||||||||||||||||||||| || ||||||||||||| ||||||||||||||||| ||||||||||||| ||||||||||||||||||||| || |    
T  85258 atcatcaaagtaaatcatattcatcacaacagcaagacaacttcatttaaacatatacatcaagtaaccatcaataataatcttcatatataacatttgc 85357  T
Q  109 aacttcatatcaacaactt 127  Q
    |||| ||||||||||||||    
T  85358 aactccatatcaacaactt 85376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 84 - 172
Target Start/End: Original strand, 85187 - 85274
Alignment:
Q  84 aataatcttcatatataacaattacaacttcatatcaacaactttcacatagtatagatcttttcacatttaatcatcaacgtaaatca 172  Q
    ||||||| ||| ||| ||| |||||||||||||||||||| ||||||||   |||| || || ||||| ||||||||||| ||||||||    
T  85187 aataatcatcaaatacaactattacaacttcatatcaacatctttcacaatatataaatattctcaca-ttaatcatcaaagtaaatca 85274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0737 (Bit Score: 82; Significance: 7e-39; HSPs: 1)
Name: scaffold0737
Description:

Target: scaffold0737; HSP #1
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 39 - 204
Target Start/End: Complemental strand, 6523 - 6359
Alignment:
Q  39 agcaagacaacatcatttaaacatatacaacaagtaaccatcattaataatcttcatatataacaattacaacttcatatcaacaactttcacatagtat 138  Q
    |||||||||||| ||||||||||||| || ||||| ||||||| |||||||| ||||||||||||||||||| |||||||||||  ||||||||   |||    
T  6523 agcaagacaacaccatttaaacatatgcagcaagtcaccatcaataataatcatcatatataacaattacaatttcatatcaacgtctttcacaatatat 6424  T
Q  139 agatcttttcacatttaatcatcaacgtaaatcaacaatattaaatcatcttagtcatcctctctg 204  Q
    | || |||||||||||||||||||| ||||||||  | |||| |||||||||| ||||||||||||    
T  6423 aaatattttcacatttaatcatcaaagtaaatcattattatt-aatcatcttattcatcctctctg 6359  T

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Target: scaffold0395 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: scaffold0395
Description:

Target: scaffold0395; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 37 - 191
Target Start/End: Original strand, 10900 - 11053
Alignment:
Q  37 acagcaagacaacatcatttaaacatatacaacaagtaaccatcattaataatcttcatatataacaattacaacttcatatcaacaactttcacatagt 136  Q
    |||||||||||||||||||||||||||| || ||||| || |||| |||||||| |||||||||||||||| || |||||||||||  ||||||||   |    
T  10900 acagcaagacaacatcatttaaacatatgcagcaagtcacaatcaataataatcatcatatataacaattaaaaattcatatcaacgtctttcacaatat 10999  T
Q  137 atagatcttttcacatttaatcatcaacgtaaatcaacaatattaaatcatctta 191  Q
    ||| || |||||||||||||||||||  |||||||| ||| ||| ||||||||||    
T  11000 ataaatattttcacatttaatcatcatagtaaatcatcaacatt-aatcatctta 11053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0810 (Bit Score: 65; Significance: 1e-28; HSPs: 2)
Name: scaffold0810
Description:

Target: scaffold0810; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 136 - 204
Target Start/End: Original strand, 3068 - 3136
Alignment:
Q  136 tatagatcttttcacatttaatcatcaacgtaaatcaacaatattaaatcatcttagtcatcctctctg 204  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  3068 tatagatcttttcacatttaatcatcaacgtaaatcaacaatattaaatcatcttaatcatcctctctg 3136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0810; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 84 - 132
Target Start/End: Original strand, 2984 - 3032
Alignment:
Q  84 aataatcttcatatataacaattacaacttcatatcaacaactttcaca 132  Q
    ||||||| ||| ||| ||| |||||||||||||||||||| ||||||||    
T  2984 aataatcatcaaatacaaccattacaacttcatatcaacatctttcaca 3032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0815 (Bit Score: 61; Significance: 2e-26; HSPs: 1)
Name: scaffold0815
Description:

Target: scaffold0815; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 27 - 159
Target Start/End: Original strand, 479 - 611
Alignment:
Q  27 attcattacgacagcaagacaacatcatttaaacatatacaacaagtaaccatcattaataatcttcatatataacaattacaacttcatatcaacaact 126  Q
    |||||| || |||||||||||||||||||| ||||||| || ||||| ||||||| |||||||| |||||||||||||||| || |||||||||||  ||    
T  479 attcatcacaacagcaagacaacatcattttaacatatgcagcaagtcaccatcaataataatcatcatatataacaattataatttcatatcaacgtct 578  T
Q  127 ttcacatagtatagatcttttcacatttaatca 159  Q
    ||||||   |||| || ||||| ||||||||||    
T  579 ttcacaatatataaatattttctcatttaatca 611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0599 (Bit Score: 61; Significance: 2e-26; HSPs: 2)
Name: scaffold0599
Description:

Target: scaffold0599; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 40 - 204
Target Start/End: Original strand, 4623 - 4786
Alignment:
Q  40 gcaagacaacatcatttaaacatatacaacaagtaaccatcattaataatcttcatatataacaattacaacttcatatcaacaactttcacatagtata 139  Q
    ||||| ||||| |||| ||  |||| || ||||| | ||||| |||||||  ||||||||||||||||||| |||||||||||  ||||||||   ||||    
T  4623 gcaaggcaacaccattaaataatatgcatcaagtcaacatcaataataataatcatatataacaattacaatttcatatcaacgtctttcacaatatata 4722  T
Q  140 gatcttttcacatttaatcatcaacgtaaatcaacaatattaaatcatcttagtcatcctctctg 204  Q
     || |||||||||||||||||||| |||||||| || |||| |||||||||| ||||||||||||    
T  4723 aatattttcacatttaatcatcaaagtaaatcatcattatt-aatcatcttattcatcctctctg 4786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0599; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 40 - 204
Target Start/End: Original strand, 205 - 368
Alignment:
Q  40 gcaagacaacatcatttaaacatatacaacaagtaaccatcattaataatcttcatatataacaattacaacttcatatcaacaactttcacatagtata 139  Q
    ||||| ||||| |||| ||  |||| || ||||| | ||||| |||||||  ||||||||||||||||||| |||||||||||  ||||||||   ||||    
T  205 gcaaggcaacaccattaaataatatgcatcaagtcaacatcaataataataatcatatataacaattacaatttcatatcaacgtctttcacaatatata 304  T
Q  140 gatcttttcacatttaatcatcaacgtaaatcaacaatattaaatcatcttagtcatcctctctg 204  Q
     || ||||||||| |||||||||| |||||||| || |||| |||||||||| ||||||||||||    
T  305 aatattttcacatataatcatcaaagtaaatcatcattatt-aatcatcttattcatcctctctg 368  T

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Target: scaffold0080 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: scaffold0080
Description:

Target: scaffold0080; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 34 - 196
Target Start/End: Complemental strand, 59455 - 59295
Alignment:
Q  34 acgacagcaagacaacatcatttaaacatatacaacaagtaaccatcattaataatcttcatatataacaattacaacttcatatcaacaactttcacat 133  Q
    ||||||||||| ||||| |||| ||| |||| || ||||| | |||||  ||||||| ||  |||||||||||||||||||||||||||| ||||||||     
T  59455 acgacagcaaggcaacaccattaaaaaatatgcagcaagtcaacatcaacaataatcatccaatataacaattacaacttcatatcaacatctttcacaa 59356  T
Q  134 agtatagatcttttcacatttaatcatcaacgtaaatcaacaatattaaatcatcttagtcat 196  Q
      |||| ||| |||||||||||||||||||| |||||| |||| ||| |||||||||| ||||    
T  59355 tatataaatc-tttcacatttaatcatcaacttaaatccacaacatt-aatcatcttattcat 59295  T

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Target: scaffold0371 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: scaffold0371
Description:

Target: scaffold0371; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 34 - 204
Target Start/End: Original strand, 3066 - 3234
Alignment:
Q  34 acgacagcaagacaacatcatttaaacatatacaacaagtaaccatcattaataatcttcatatataacaattacaacttcatatcaacaactttcac-a 132  Q
    |||||| |||| ||||| |||| ||  |||| || ||||| | |||||  ||||||| ||  ||||||| ||||||||||||||||||||  |||||| |    
T  3066 acgacaacaaggcaacaacattaaataatatgcagcaagtcaacatcaacaataatcatccaatataaccattacaacttcatatcaacatttttcacga 3165  T
Q  133 tagtatagatcttttcacatttaatcatcaacgtaaatcaacaatattaaatcatcttagtcatcctctctg 204  Q
    || |||| ||| |||||||||||||||||||| |||||| |||| ||| |||||||||| |||| |||||||    
T  3166 ta-tataaatc-tttcacatttaatcatcaacttaaatccacaacatt-aatcatcttattcatactctctg 3234  T

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Target: scaffold0061 (Bit Score: 44; Significance: 3e-16; HSPs: 2)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 96 - 191
Target Start/End: Complemental strand, 15515 - 15421
Alignment:
Q  96 atataacaattacaacttcatatcaacaactttcacatagtatagatcttttcacatttaatcatcaacgtaaatcaacaatattaaatcatctta 191  Q
    ||||||||||  ||||||||||||||||  |||||||   |||| || ||||||||||||||||||||| ||||||||||| ||| ||||||||||    
T  15515 atataacaatcgcaacttcatatcaacatttttcacaatatataaatattttcacatttaatcatcaacttaaatcaacaacatt-aatcatctta 15421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0061; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 96 - 191
Target Start/End: Complemental strand, 24573 - 24479
Alignment:
Q  96 atataacaattacaacttcatatcaacaactttcacatagtatagatcttttcacatttaatcatcaacgtaaatcaacaatattaaatcatctta 191  Q
    ||||||||||  ||||||||||||||||  |||||||   |||| || ||||||||||||||||||||| ||||||||||| ||| ||||||||||    
T  24573 atataacaatcgcaacttcatatcaacatttttcacaatatataaatattttcacatttaatcatcaacttaaatcaacaacatt-aatcatctta 24479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0802 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0802
Description:

Target: scaffold0802; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 34 - 182
Target Start/End: Complemental strand, 5606 - 5459
Alignment:
Q  34 acgacagcaagacaacatcatttaaacatatacaacaagtaaccatcattaataatcttcatatataacaattacaacttcatatcaacaactttcacat 133  Q
    ||||||||||| || || |||| ||  |||| || ||||| | |||||  ||||||| ||  ||||||  |||||||||||||||||||| ||||||||     
T  5606 acgacagcaaggcagcaccattaaataatatgcagcaagttaacatcaacaataatcatccaatataaacattacaacttcatatcaacacctttcacaa 5507  T
Q  134 agtatagatcttttcacatttaatcatcaacgtaaatcaacaatattaa 182  Q
      |||| ||| |||||||||||||||||||| |||||| |||| |||||    
T  5506 tatataaatc-tttcacatttaatcatcaacttaaatccacaacattaa 5459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0335 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0335
Description:

Target: scaffold0335; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 96 - 182
Target Start/End: Original strand, 869 - 954
Alignment:
Q  96 atataacaattacaacttcatatcaacaactttcacatagtatagatcttttcacatttaatcatcaacgtaaatcaacaatattaa 182  Q
    ||||||| |||||||||||||||||||| ||||||||   |||  ||| |||||||||||||||||||| |||||| |||| |||||    
T  869 atataaccattacaacttcatatcaacatctttcacaatatattaatc-tttcacatttaatcatcaacttaaatccacaacattaa 954  T

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Target: scaffold0434 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0434
Description:

Target: scaffold0434; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 84 - 172
Target Start/End: Complemental strand, 6859 - 6771
Alignment:
Q  84 aataatcttcatatataacaattacaacttcatatcaacaactttcacatagtatagatcttttcacatttaatcatcaacgtaaatca 172  Q
    ||||||| ||| ||||||  ||||||||| |||||||||  ||||||||   |||| || |||||||||||||||||||| ||||||||    
T  6859 aataatcatcaaatataatcattacaactccatatcaacgtctttcacaatatataaatattttcacatttaatcatcaaagtaaatca 6771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 96 - 182
Target Start/End: Original strand, 76954 - 77038
Alignment:
Q  96 atataacaattacaacttcatatcaacaactttcacatagtatagatcttttcacatttaatcatcaacgtaaatcaacaatattaa 182  Q
    ||||||| |||||||||||||||| ||| ||||||||   |||| ||  |||||||||||||||||||| |||||| |||| |||||    
T  76954 atataaccattacaacttcatatccacatctttcacaatatataaat--tttcacatttaatcatcaacttaaatccacaacattaa 77038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0075 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0075
Description:

Target: scaffold0075; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 9 - 55
Target Start/End: Complemental strand, 8396 - 8350
Alignment:
Q  9 atcatcaaagtaaatcatattcattacgacagcaagacaacatcatt 55  Q
    |||||||||||||||||||||||| |||||| ||||||| |||||||    
T  8396 atcatcaaagtaaatcatattcatcacgacaacaagacagcatcatt 8350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0100 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0100
Description:

Target: scaffold0100; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 96 - 172
Target Start/End: Complemental strand, 36218 - 36143
Alignment:
Q  96 atataacaattacaacttcatatcaacaactttcacatagtatagatcttttcacatttaatcatcaacgtaaatca 172  Q
    ||||||| |||||||||||||||||||| ||||||||   |||| || || ||||| ||||||||||| ||||||||    
T  36218 atataaccattacaacttcatatcaacatctttcacaatatataaatattctcaca-ttaatcatcaaagtaaatca 36143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0134 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0134
Description:

Target: scaffold0134; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 34 - 132
Target Start/End: Complemental strand, 10128 - 10030
Alignment:
Q  34 acgacagcaagacaacatcatttaaacatatacaacaagtaaccatcattaataatcttcatatataacaattacaacttcatatcaacaactttcaca 132  Q
    ||||||||||| || || |||| ||  |||| || ||||| | |||||  ||||||| ||  ||||||| |||||||||||||||||||| ||||||||    
T  10128 acgacagcaaggcagcaccattaaataatatgcagcaagtcaacatcaacaataatcatccaatataaccattacaacttcatatcaacatctttcaca 10030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0384 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0384
Description:

Target: scaffold0384; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 96 - 132
Target Start/End: Complemental strand, 8226 - 8190
Alignment:
Q  96 atataacaattacaacttcatatcaacaactttcaca 132  Q
    ||||||| |||||||||||||||||||| ||||||||    
T  8226 atataaccattacaacttcatatcaacatctttcaca 8190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0375 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0375
Description:

Target: scaffold0375; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 96 - 132
Target Start/End: Complemental strand, 9142 - 9106
Alignment:
Q  96 atataacaattacaacttcatatcaacaactttcaca 132  Q
    ||||||| |||||||||||||||||||| ||||||||    
T  9142 atataaccattacaacttcatatcaacatctttcaca 9106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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