View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2120_low_3 (Length: 464)
Name: NF2120_low_3
Description: NF2120
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2120_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 362; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 6 - 419
Target Start/End: Original strand, 37128789 - 37129203
Alignment:
| Q |
6 |
agaagcatagggaggaaaaataggtttttcattatattattggttgtcaaacctatatatgcctgccaattcgtagaaggagccgaacgcaagtgaaatt |
105 |
Q |
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|||| |||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37128789 |
agaaccatagggaggcaaaataggtttttcattatattattggttgtcaaaccaatatatgcctgccaattcgtagaaggagccgaacgcaagtgaaatt |
37128888 |
T |
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| Q |
106 |
ttcagcccattatccttaggcaattgctttatcgactcttcatttttactcaaaagctctcaatttatcaaaatgtatctttcgatgacacagatctatt |
205 |
Q |
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| T |
37128889 |
ttcagcccattatccttaggcaattgctttatcgactcttcatttttactcaaaagctctcaatttatcaaaatgtatctttcgataacacaaatctatt |
37128988 |
T |
|
| Q |
206 |
ggaatggagtattttcagattgacttatttttactatccatcaaaaactattttttgatcgaca-nnnnnnncagggttgagcgacctaagaacctaaag |
304 |
Q |
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| T |
37128989 |
ggaatggagtattttcagattgatttatttttactatccatcaaaaactattttttgatcgacattttttttcagggttgagcgacctaagaacctaaag |
37129088 |
T |
|
| Q |
305 |
aacaaccttattatccttatcaattcatgctatgtttcaggctaatttaagagggtccctgttaacccattttagcatcccctactcataagagcatttt |
404 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37129089 |
aacaaccttattatccttatcaattcatgctatgtttcaggctaatttaagagggtccctgttaacccattttagcatcccctactcataagagcatttt |
37129188 |
T |
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| Q |
405 |
tttctacccatcaga |
419 |
Q |
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||||||||||||||| |
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| T |
37129189 |
tttctacccatcaga |
37129203 |
T |
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