View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2120_low_6 (Length: 393)
Name: NF2120_low_6
Description: NF2120
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2120_low_6 |
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| [»] scaffold0025 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 209; Significance: 1e-114; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 164 - 376
Target Start/End: Original strand, 45411742 - 45411954
Alignment:
| Q |
164 |
cttaattaccttctttaaaccagaaagcatagtgatatcaagctcattgtttcccacaacttctttaatctcttctcttaattgattttgccaatcttca |
263 |
Q |
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| T |
45411742 |
cttaattaccttctttaaaccagaaagcatagtgatatcaagctcattgtttcccacaacttctttaatctcttctcttaattgattttgccaatcttca |
45411841 |
T |
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| Q |
264 |
tgtgtggcaagaagcaacaaagtccatgtgatagcaagtgctgttgtttcatgtccaccaaagaagaaagtcttgcattcatcaactacttctcttgatg |
363 |
Q |
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| T |
45411842 |
tgtgtagcaagaagcaacaaagtccatgtgatagcaagtgctgttgtttcatgtccaccaaagaagaaagtcttgcattcatcaactacttctcttgatg |
45411941 |
T |
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| Q |
364 |
taagtgtctttcc |
376 |
Q |
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||||||||||||| |
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| T |
45411942 |
taagtgtctttcc |
45411954 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 169 - 374
Target Start/End: Original strand, 45420847 - 45421052
Alignment:
| Q |
169 |
ttaccttctttaaaccagaaagcatagtgatatcaagctcattgtttcccacaacttctttaatctcttctcttaattgattttgccaatcttcatgtgt |
268 |
Q |
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| T |
45420847 |
ttaccttctttagaccagcaagcatcgtgacatcaaactcattgtttcccacaacttctttaatctcttctcttaattgattttgccaatcttcatgtgt |
45420946 |
T |
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| Q |
269 |
ggcaagaagcaacaaagtccatgtgatagcaagtgctgttgtttcatgtccaccaaagaagaaagtcttgcattcatcaactacttctcttgatgtaagt |
368 |
Q |
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| T |
45420947 |
agcaagaagcaacaaagtccatgtgatagcaagtgctgttgtttcatgtccaccaaagaagaaagttttgcattcatcaactacttctcgtgttgttaat |
45421046 |
T |
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| Q |
369 |
gtcttt |
374 |
Q |
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|||||| |
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| T |
45421047 |
gtcttt |
45421052 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 45411578 - 45411677
Alignment:
| Q |
1 |
ttaaagttaatatagatgaattaattaatcgttaaaacaaaattgaacagtaaattagggagtta-tttttaatttaattccaccaaaggcacagttttt |
99 |
Q |
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| T |
45411578 |
ttaaagttaatatagatgaattaattaatcgttaaaacaaaattgaacagaaaattagggagttattttttaatttaattctaccaaaggcacagttttt |
45411677 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 222 - 346
Target Start/End: Original strand, 29801095 - 29801219
Alignment:
| Q |
222 |
acttctttaatctcttctcttaattgattttgccaatcttcatgtgtggcaagaagcaacaaagtccatgtgatagcaagtgctgttgtttcatgtccac |
321 |
Q |
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| T |
29801095 |
acttctcttatctcatctctcaattgattttgccaatctttatgcatagctaaaagcatcaaagtccaagaaatagccaatgctgttgtctcatgaccac |
29801194 |
T |
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| Q |
322 |
caaagaagaaagtcttgcattcatc |
346 |
Q |
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||| ||| || |||||||| ||||| |
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| T |
29801195 |
caatgaaaaaggtcttgcactcatc |
29801219 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 170; Significance: 4e-91; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 170; E-Value: 4e-91
Query Start/End: Original strand, 169 - 374
Target Start/End: Original strand, 26835914 - 26836119
Alignment:
| Q |
169 |
ttaccttctttaaaccagaaagcatagtgatatcaagctcattgtttcccacaacttctttaatctcttctcttaattgattttgccaatcttcatgtgt |
268 |
Q |
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| T |
26835914 |
ttaccttctttagaccagcaagcatcgtgatatcaaactcattgtttcccacaacttctttaatctcttctcttaattgattttgccaatcttcatgtgt |
26836013 |
T |
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| Q |
269 |
ggcaagaagcaacaaagtccatgtgatagcaagtgctgttgtttcatgtccaccaaagaagaaagtcttgcattcatcaactacttctcttgatgtaagt |
368 |
Q |
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| T |
26836014 |
ggcaagaagcaacaaagtccatgtgatagcaagtgctgttgtttcatgtccaccaaagaagaaagttttgcattcatcaactacttctcgtgttgttaat |
26836113 |
T |
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| Q |
369 |
gtcttt |
374 |
Q |
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|||||| |
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| T |
26836114 |
gtcttt |
26836119 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 300 - 346
Target Start/End: Complemental strand, 6973227 - 6973181
Alignment:
| Q |
300 |
agtgctgttgtttcatgtccaccaaagaagaaagtcttgcattcatc |
346 |
Q |
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| T |
6973227 |
agtgcagttgtttcatgtccagcaaagaagaatgttttgcattcatc |
6973181 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0025 (Bit Score: 63; Significance: 3e-27; HSPs: 1)
Name: scaffold0025
Description:
Target: scaffold0025; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 167 - 349
Target Start/End: Original strand, 64397 - 64579
Alignment:
| Q |
167 |
aattaccttctttaaaccagaaagcatagtgatatcaagctcattgtttcccacaacttctttaatctcttctcttaattgattttgccaatcttcatgt |
266 |
Q |
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| T |
64397 |
aattaccttctttaaatcagcaagaaaattgatatcaagttcttccttgccaacaacttctttaatttcatctctcaattggttttgccaatcttcatgc |
64496 |
T |
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| Q |
267 |
gtggcaagaagcaacaaagtccatgtgatagcaagtgctgttgtttcatgtccaccaaagaagaaagtcttgcattcatcaac |
349 |
Q |
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| T |
64497 |
aaagctagaagcagcaaagtccatgtgattgaaagtgatgtggtctcatatccaccaaagaaaaatgtcttgcactcatcaac |
64579 |
T |
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