View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2120_low_8 (Length: 334)
Name: NF2120_low_8
Description: NF2120
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2120_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 131; Significance: 6e-68; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 19 - 149
Target Start/End: Original strand, 10035007 - 10035137
Alignment:
| Q |
19 |
gtgatgtttggaggtgcagcagctggggtgcgtgacctgttttgctgctgctgttgggagcctgctgtcatgctgcaggtttggtgttgctgggcatgtg |
118 |
Q |
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| T |
10035007 |
gtgatgtttggaggtgcagcagctggggtgcgtgacctgttttgctgctgctgttgggagcctgctgtcatgctgcaggtttggtgttgctgggcatgtg |
10035106 |
T |
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| Q |
119 |
cgcctgtttggattttaggcagtgaggctgg |
149 |
Q |
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| T |
10035107 |
cgcctgtttggattttaggcagtgaggctgg |
10035137 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 194 - 324
Target Start/End: Original strand, 10035137 - 10035267
Alignment:
| Q |
194 |
gcctttgttgggttttgtggttggtttcttcttgggtggaggtgtcacgcatataggcggcaccttgttgtattgtttccctttccttgccgcgagtggt |
293 |
Q |
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| T |
10035137 |
gcctttgttgggttttgtggttggtttcttcttgggtggaggtgtcacgcatataggcggcaccttgttgtattgtttccctttccttgccgcgagtggt |
10035236 |
T |
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| Q |
294 |
tgtgcgtcttgcatatactcgtcgagaataa |
324 |
Q |
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| T |
10035237 |
tgtgcgtcttgcatatactcgtcgagaataa |
10035267 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 19 - 149
Target Start/End: Original strand, 10095376 - 10095506
Alignment:
| Q |
19 |
gtgatgtttggaggtgcagcagctggggtgcgtgacctgttttgctgctgctgttgggagcctgctgtcatgctgcaggtttggtgttgctgggcatgtg |
118 |
Q |
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| T |
10095376 |
gtgatgtttggaggtgcagcagctggggtgcgtgacctgttttgctgctgctgttgggagcctgctgtcatgctgcaggtttggtgttgctgggcatgtg |
10095475 |
T |
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| Q |
119 |
cgcctgtttggattttaggcagtgaggctgg |
149 |
Q |
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| T |
10095476 |
cgcctgtttggattttaggcagtgaggctgg |
10095506 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 194 - 324
Target Start/End: Original strand, 10095506 - 10095636
Alignment:
| Q |
194 |
gcctttgttgggttttgtggttggtttcttcttgggtggaggtgtcacgcatataggcggcaccttgttgtattgtttccctttccttgccgcgagtggt |
293 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
10095506 |
gcctttgttgggttttgtggttggtttcttcttgggtggaggtgtcacgcatataggcggcaccttgttgtattgtttcccttttcttgccgcgagtggt |
10095605 |
T |
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| Q |
294 |
tgtgcgtcttgcatatactcgtcgagaataa |
324 |
Q |
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| T |
10095606 |
tgtgcgtcttgcatatactcgtcgagaataa |
10095636 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 293 - 325
Target Start/End: Original strand, 6901999 - 6902031
Alignment:
| Q |
293 |
ttgtgcgtcttgcatatactcgtcgagaataat |
325 |
Q |
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|||||||||||||||||||||| |||||||||| |
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| T |
6901999 |
ttgtgcgtcttgcatatactcgacgagaataat |
6902031 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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