View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend |
| Query |
| Query hiting target |
| Query hiting target's complemental strand |
| Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2120_low_9 (Length: 313)
Name: NF2120_low_9
Description: NF2120
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[»] NF2120_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 150; Significance: 3e-79; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 137 - 303
Target Start/End: Complemental strand, 31064822 - 31064654
Alignment:
Q |
137 |
ccggtcaatcttcggtggctatattttcacgtgacttacaccaaatctaaaacttaaagttaataaatctcactgttcatattaatgaattagaaaaata |
236 |
Q |
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T |
31064822 |
ccggtcaatcttcggtggctatattttcacgtgacttacaccaaatctaaaacttaaagttaataaatctcactgttcatattaatgaattagaaaaata |
31064723 |
T |
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Q |
237 |
ttttcg--tttgtgtcctgtagcttgtgggatcaatctcacatgtatcttgtttcacatctctacatct |
303 |
Q |
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T |
31064722 |
ttttcgtttttgtgtcctgtagctcgtgggatcaatctcacctgtatcttgtttcacatctctacatct |
31064654 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 31064964 - 31064895
Alignment:
Q |
1 |
cacccatgttccttttaatttcttgttagattatcactattcttcaagattaacttagagaaaccaacaa |
70 |
Q |
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T |
31064964 |
cacccatgttccttttaatttcttgttagattatcactattcttcaagattaacttagagaaaccaacaa |
31064895 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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