View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21210_high_12 (Length: 342)
Name: NF21210_high_12
Description: NF21210
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21210_high_12 |
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Alignment Details
Target: chr5 (Bit Score: 281; Significance: 1e-157; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 1 - 331
Target Start/End: Original strand, 35938785 - 35939115
Alignment:
| Q |
1 |
tgttgggtactgaaacatctttttgttgggtactgaaacatctaaacatcatatagttattccnnnnnnnatattaactttctttgtttaaatgacatga |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| | |
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| T |
35938785 |
tgttgggtactgaaacatctttttgttgggtactgaaacatctaaacatcatatagttattcctttttttatattaactttctttgtttaaatgacatta |
35938884 |
T |
|
| Q |
101 |
catacacatttctcttctatttttccccttaggcatctacgatggtaggtatttatccttataagcgaaagtgctaaatagacattctcattgttgcata |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35938885 |
catacacatttctcttctatttttccccttaggcatctacgatggtaggtatttatccttataagcgaaagtgctaaatagacattctcattgttgcata |
35938984 |
T |
|
| Q |
201 |
agaaatatgagtatttatagagattttttgaaaaaggagtatttatagagatgtgtacttttatagtgactctcttcaattattattatattttaatatt |
300 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35938985 |
agaaatatgagtatttatagagattttttgaaaaaagagtatttatagagatgtgtacttttatagtgactctcttcaattattattatattttaatatt |
35939084 |
T |
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| Q |
301 |
nnnnnnnttaaatgataatgatattgagtat |
331 |
Q |
| |
|
|||||||||||||||||||||||| |
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| T |
35939085 |
aaaaaaattaaatgataatgatattgagtat |
35939115 |
T |
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