View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21210_high_18 (Length: 289)

Name: NF21210_high_18
Description: NF21210
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21210_high_18
NF21210_high_18
[»] scaffold0001 (1 HSPs)
scaffold0001 (22-275)||(185972-186238)
[»] scaffold0035 (2 HSPs)
scaffold0035 (22-280)||(97733-98004)
scaffold0035 (28-280)||(88021-88286)
[»] scaffold0158 (3 HSPs)
scaffold0158 (22-274)||(36571-36836)
scaffold0158 (22-274)||(31103-31349)
scaffold0158 (203-280)||(36838-36915)
[»] chr1 (2 HSPs)
chr1 (22-280)||(18477889-18478159)
chr1 (22-280)||(18487985-18488254)
[»] chr4 (2 HSPs)
chr4 (21-280)||(14233376-14233648)
chr4 (21-280)||(14223281-14223553)
[»] chr2 (1 HSPs)
chr2 (21-280)||(28385837-28386109)
[»] scaffold0564 (1 HSPs)
scaffold0564 (21-280)||(628-900)
[»] scaffold1407 (1 HSPs)
scaffold1407 (21-280)||(1469-1727)
[»] scaffold0177 (1 HSPs)
scaffold0177 (21-280)||(32117-32376)


Alignment Details
Target: scaffold0001 (Bit Score: 183; Significance: 5e-99; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 183; E-Value: 5e-99
Query Start/End: Original strand, 22 - 275
Target Start/End: Complemental strand, 186238 - 185972
Alignment:
22 tgggggagactgattctcccaaacccgtgacgggcgtcacagggtgtgacggtctgcttgtcacggggtggtgt-------------tggtgacagccag 108  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||| ||||||||||||||              |||||||||||||    
186238 tgggggagactgattctcccgaacccgtgacgggcgtcacagggtgtgacagtctgctcgtcacggggtggtgacggtctggggtgctggtgacagccag 186139  T
109 gtcgagttgaaaggtgacggtcaacccgtcacatggtgtgacggccgtcaccctgaagctaaattctttaggacttcttcctttctttgttttctcgccg 208  Q
    ||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
186138 gtcgagttgaaaggtgacggtcaacccgtcacagggtttgacggccgtcaccctgaagctgaattctttaggacttcttcctttctttgttttctcgccg 186039  T
209 aatttcgtcatttttgcgcatagaggcctttattgccgtgtacctgaaacatagccatacaacccag 275  Q
    ||||||||||||||||||||| ||||||||||| || ||||||||||||||||||||||||||||||    
186038 aatttcgtcatttttgcgcatggaggcctttatcgctgtgtacctgaaacatagccatacaacccag 185972  T

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Target: scaffold0035 (Bit Score: 172; Significance: 2e-92; HSPs: 2)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 22 - 280
Target Start/End: Original strand, 97733 - 98004
Alignment:
22 tgggggagactgattctcccaaacccgtgacgggcgtcacagggtgtgacggtctgcttgtcacggggtggtgt-------------tggtgacagccag 108  Q
    ||||| |||||||||||||| ||||||||||||||||||| ||||||||||||||||| ||||||||||||||              |||||||||||||    
97733 tggggaagactgattctcccgaacccgtgacgggcgtcacggggtgtgacggtctgctcgtcacggggtggtgacggtctggggtgctggtgacagccag 97832  T
109 gtcgagttgaaaggtgacggtcaacccgtcacatggtgtgacggccgtcaccctgaagctaaattctttaggacttcttcctttctttgttttctcgccg 208  Q
    ||||||||||| ||||||||||||||||||||| |||||||||| ||||||||||||||| |||||||||||||||||| ||||||||||||||||||||    
97833 gtcgagttgaagggtgacggtcaacccgtcacagggtgtgacggtcgtcaccctgaagctgaattctttaggacttctttctttctttgttttctcgccg 97932  T
209 aatttcgtcatttttgcgcatagaggcctttattgccgtgtacctgaaacatagccatacaacccagtataa 280  Q
    ||||||| ||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||| ||||    
97933 aatttcgccatttttgcgcatggaggcctttattgctgtgtacctgaaacatagccatacaacccagcataa 98004  T

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Target: scaffold0035; HSP #2
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 28 - 280
Target Start/End: Original strand, 88021 - 88286
Alignment:
28 agactgattctcccaaacccgtgacgggcgtcacagggtgtgacggtctgcttgtcacggggtggtgt-------------tggtgacagccaggtcgag 114  Q
    |||||||||||||| ||||||||||||||||||||||||||||| || |||||||||||||||||||              |||||||||||||||||||    
88021 agactgattctcccgaacccgtgacgggcgtcacagggtgtgacagtttgcttgtcacggggtggtgacggtctggggtgctggtgacagccaggtcgag 88120  T
115 ttgaaaggtgacggtcaacccgtcacatggtgtgacggccgtcaccctgaagctaaattctttaggacttcttcctttctttgttttctcgccgaatttc 214  Q
    ||||| |||||||||||||| |||||| ||||||||||  |||||||||||||| |||||||||||||||||| |||||||||||||||||| |||||||    
88121 ttgaagggtgacggtcaacctgtcacagggtgtgacggttgtcaccctgaagctgaattctttaggacttctttctttctttgttttctcgctgaatttc 88220  T
215 gtcatttttgcgcatagaggcctttattgccgtgtacctgaaacatagccatacaacccagtataa 280  Q
    ||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||| ||||    
88221 gtcatttttgcgcatggaggcctttattgctgtgtacctgaaacatagccatacaacccagcataa 88286  T

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Target: scaffold0158 (Bit Score: 162; Significance: 2e-86; HSPs: 3)
Name: scaffold0158
Description:

Target: scaffold0158; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 22 - 274
Target Start/End: Original strand, 36571 - 36836
Alignment:
22 tgggggagactgattctcccaaacccgtgacgggcgtcacagggtgtgacggtctgcttgtcacggggtggtgt-------------tggtgacagccag 108  Q
    ||||| |||||||||||||| ||||| ||||||||||||||||||| ||||||||  | ||||||||||||||              |||||||||||||    
36571 tggggcagactgattctcccgaacccatgacgggcgtcacagggtgcgacggtcttatcgtcacggggtggtgacggtctgcggtgctggtgacagccag 36670  T
109 gtcgagttgaaaggtgacggtcaacccgtcacatggtgtgacggccgtcaccctgaagctaaattctttaggacttcttcctttctttgttttctcgccg 208  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| | ||| ||||||    
36671 gtcgagttgaaaggtgacggtcaacccgtcacagggtgtgacggccgtcaccctgaagctgaattctttaggacttcttcctttcttcgctttgtcgccg 36770  T
209 aatttcgtcatttttgcgcatagaggcctttattgccgtgtacctgaaacatagccatacaaccca 274  Q
    ||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||    
36771 aatttcgtcatttttgcgcatggaggcctttattgctgtgtacctgaaacatagccatacaaccca 36836  T

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Target: scaffold0158; HSP #2
Raw Score: 124; E-Value: 8e-64
Query Start/End: Original strand, 22 - 274
Target Start/End: Original strand, 31103 - 31349
Alignment:
22 tgggggagactgattctcccaaacccgtgacgggcgtcacagggtgtgacggtctgcttgtcacggggtggtgt-------------tggtgacagccag 108  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||              |||||||||||||    
31103 tgggggagactgattctcccgaacccgtgacgggcgtcacagggtgtgacggtctgctcgtcacggggtggtgacggtctggggtgctggtgacagccag 31202  T
109 gtcgagttgaaaggtgacggtcaacccgtcacatggtgtgacggccgtcaccctgaagctaaattctttaggacttcttcctttctttgttttctcgccg 208  Q
    |||||||||||||||||||||||||||||                   |||||||||||| |||||||||||||||||||||||||| | ||||||||||    
31203 gtcgagttgaaaggtgacggtcaacccgt-------------------caccctgaagctgaattctttaggacttcttcctttcttcgctttctcgccg 31283  T
209 aatttcgtcatttttgcgcatagaggcctttattgccgtgtacctgaaacatagccatacaaccca 274  Q
    ||||||||||||||||||||| |||||||||||||| ||||||||||||||||||| |||||||||    
31284 aatttcgtcatttttgcgcatggaggcctttattgctgtgtacctgaaacatagccgtacaaccca 31349  T

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Target: scaffold0158; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 203 - 280
Target Start/End: Original strand, 36838 - 36915
Alignment:
203 tcgccgaatttcgtcatttttgcgcatagaggcctttattgccgtgtacctgaaacatagccatacaacccagtataa 280  Q
    ||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||| ||||    
36838 tcgccgaatttcgtcatttttgcgcatggaggcctttattgctgtgtacctgaaacatagccatacaacccagcataa 36915  T

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Target: chr1 (Bit Score: 124; Significance: 8e-64; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 124; E-Value: 8e-64
Query Start/End: Original strand, 22 - 280
Target Start/End: Original strand, 18477889 - 18478159
Alignment:
22 tgggggagactgattctcccaaacccgtgacgggcgtcacagggtgtgacggtctgcttgtcacggggtggtgt-------------tggtgacagccag 108  Q
    |||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||| | ||||||||||||              |||| || |||||    
18477889 tgggggagactgattctcccgaacccatgacgggcgtcacagggtgtgacggtctgctcgacacggggtggtgacggtctggggtgctggtaacggccag 18477988  T
109 gtcgagttgaaaggtgacggtcaacccgtcacatggtgtgacggccgtcaccctgaagctaaattctttaggacttcttcctttctttgttttctcgccg 208  Q
    |||||| ||||||| ||||||||| |||||||| | |||||||| |||| ||| ||| || |||||||||||||||||||||||||||||||||| ||||    
18477989 gtcgagctgaaaggagacggtcaaaccgtcacaggatgtgacggtcgtccccccgaa-ctgaattctttaggacttcttcctttctttgttttcttgccg 18478087  T
209 aatttcgtcatttttgcgcatagaggcctttattgccgtgtacctgaaacatagccatacaacccagtataa 280  Q
    |||||||||||||||||||||  ||||||||||||| | |||||||||||| |||||||||| |||| ||||    
18478088 aatttcgtcatttttgcgcatgaaggcctttattgctgagtacctgaaacacagccatacaaaccagcataa 18478159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 22 - 280
Target Start/End: Original strand, 18487985 - 18488254
Alignment:
22 tgggggagactgattctcccaaacccgtgacgggcgtcacagggtgtgacggtctgcttgtcacggggtggtgt-------------tggtgacagccag 108  Q
    ||||||||||||||||| || ||||||||||| ||||||||||||||||| ||||||| | ||||||||||||              |||| || |||||    
18487985 tgggggagactgattcttccgaacccgtgacgtgcgtcacagggtgtgacagtctgctcgacacggggtggtgacggtctggggtgctggtaacggccag 18488084  T
109 gtcgagttgaaaggtgacggtcaacccgtcacatggtgtgacggccgtcaccctgaagctaaattctttaggacttcttcctttctttgttttctcgccg 208  Q
    |||||| ||||||| ||||||||| |||||||| | |||||||| ||||||| |||| || |||||||||||||||||||||||||||||||||| ||||    
18488085 gtcgagctgaaaggagacggtcaatccgtcacaggatgtgacggtcgtcacc-tgaa-ctgaattctttaggacttcttcctttctttgttttcttgccg 18488182  T
209 aatttcgtcatttttgcgcatagaggcctttattgccgtgtacctgaaacatagccatacaacccagtataa 280  Q
    ||||||||||||||||||||| |||||||||||||| | |||||||||||| |||||||||| |||| ||||    
18488183 aatttcgtcatttttgcgcatggaggcctttattgctgagtacctgaaacacagccatacaatccagcataa 18488254  T

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Target: chr4 (Bit Score: 117; Significance: 1e-59; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 21 - 280
Target Start/End: Complemental strand, 14233648 - 14233376
Alignment:
21 atgggggagactgattctcccaaacccgtgacgggcgtcacagggtgtgacggtctgcttgtcacggggtggtgttggt-------------gacagcca 107  Q
    ||||||||||||| |||| || |||||||||||| ||||||||||||||||| |||||| ||||||||||||||  |||             ||||||||    
14233648 atgggggagactgcttcttccgaacccgtgacggacgtcacagggtgtgacgatctgctcgtcacggggtggtgacggtctgggatgctgatgacagcca 14233549  T
108 ggtcgagttgaaaggtgacggtcaacccgtcacatggtgtgacggccgtcaccctgaagctaaattctttaggacttcttcctttctttgttttctcgcc 207  Q
    |||||||||| | ||||||| ||| | ||||||| ||| |||||||||||||||||||||  ||||| ||| |||||||| | |||||||||||||| |     
14233548 ggtcgagttggagggtgacgatcagcacgtcacagggtatgacggccgtcaccctgaagcagaattccttaagacttctttccttctttgttttctcact 14233449  T
208 gaatttcgtcatttttgcgcatagaggcctttattgccgtgtacctgaaacatagccatacaacccagtataa 280  Q
    ||||| ||||||||||||||||  ||||||||||||| |||||||||||||||||||||||||||||| ||||    
14233448 gaattccgtcatttttgcgcatgaaggcctttattgctgtgtacctgaaacatagccatacaacccagcataa 14233376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 21 - 280
Target Start/End: Complemental strand, 14223553 - 14223281
Alignment:
21 atgggggagactgattctcccaaacccgtgacgggcgtcacagggtgtgacggtctgcttgtcacggggtggtgttggt-------------gacagcca 107  Q
    ||||||||||||| |||| || |||||||||||| ||||||||||||||||| |||||| ||||||||||||||  |||             ||||||||    
14223553 atgggggagactgcttcttccgaacccgtgacggacgtcacagggtgtgacgatctgctcgtcacggggtggtgacggtctgggatgctgatgacagcca 14223454  T
108 ggtcgagttgaaaggtgacggtcaacccgtcacatggtgtgacggccgtcaccctgaagctaaattctttaggacttcttcctttctttgttttctcgcc 207  Q
    |||||||||| | ||||||| ||| | ||||||| ||| |||||||||||||||||||||  ||||| ||| |||||||  | |||||||||||||| |     
14223453 ggtcgagttggagggtgacgatcagcacgtcacagggtatgacggccgtcaccctgaagcagaattccttaagacttctatccttctttgttttctcact 14223354  T
208 gaatttcgtcatttttgcgcatagaggcctttattgccgtgtacctgaaacatagccatacaacccagtataa 280  Q
    ||||| ||||||||||||||||  |||||||||||||  ||||||||||||||||||||||||||||| ||||    
14223353 gaattccgtcatttttgcgcatgaaggcctttattgctatgtacctgaaacatagccatacaacccagcataa 14223281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 117; Significance: 1e-59; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 21 - 280
Target Start/End: Complemental strand, 28386109 - 28385837
Alignment:
21 atgggggagactgattctcccaaacccgtgacgggcgtcacagggtgtgacggtctgcttgtcacggggtggtgt-------------tggtgacagcca 107  Q
    ||||||||||||| |||| || |||||||||||||||||||||||||||||| |||||| ||||||||||||||              ||||||||||||    
28386109 atgggggagactgcttcttccgaacccgtgacgggcgtcacagggtgtgacgatctgctcgtcacggggtggtgacggtctgggatgctggtgacagcca 28386010  T
108 ggtcgagttgaaaggtgacggtcaacccgtcacatggtgtgacggccgtcaccctgaagctaaattctttaggacttcttcctttctttgttttctcgcc 207  Q
    |||||||||| | ||||||| ||| | ||||||| ||| ||||| |||||||||||||||  |||||  || |||||||| | |||||||||||||| |     
28386009 ggtcgagttggagggtgacgatcagcacgtcacagggtatgacgaccgtcaccctgaagcagaattccctaagacttctttccttctttgttttctcact 28385910  T
208 gaatttcgtcatttttgcgcatagaggcctttattgccgtgtacctgaaacatagccatacaacccagtataa 280  Q
    ||||| ||||||||||||||||  ||||||||||||| |||||||||||||||||||||||||||||| ||||    
28385909 gaattccgtcatttttgcgcatgaaggcctttattgctgtgtacctgaaacatagccatacaacccagcataa 28385837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0564 (Bit Score: 113; Significance: 3e-57; HSPs: 1)
Name: scaffold0564
Description:

Target: scaffold0564; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 21 - 280
Target Start/End: Original strand, 628 - 900
Alignment:
21 atgggggagactgattctcccaaacccgtgacgggcgtcacagggtgtgacggtctgcttgtcacggggtggtgttggt-------------gacagcca 107  Q
    ||||||||||||| |||| || |||||||||||| ||||||||||||||||| |||||| ||||||||||||||  |||             ||||||||    
628 atgggggagactgcttcttccgaacccgtgacggacgtcacagggtgtgacgatctgctcgtcacggggtggtgacggtctgggatgctgatgacagcca 727  T
108 ggtcgagttgaaaggtgacggtcaacccgtcacatggtgtgacggccgtcaccctgaagctaaattctttaggacttcttcctttctttgttttctcgcc 207  Q
    |||||||||| | ||||||| ||| | ||||||| ||| |||||||||||||||||||||  ||||| ||| |||||||| | |||||||||||||| |     
728 ggtcgagttggagggtgacgatcagcacgtcacagggtatgacggccgtcaccctgaagcagaattccttaagacttctttccttctttgttttctcact 827  T
208 gaatttcgtcatttttgcgcatagaggcctttattgccgtgtacctgaaacatagccatacaacccagtataa 280  Q
    ||||| ||||||||||| ||||  ||||||||||||| |||||||||||||||||||||||||||||| ||||    
828 gaattccgtcatttttgagcatgaaggcctttattgctgtgtacctgaaacatagccatacaacccagcataa 900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1407 (Bit Score: 112; Significance: 1e-56; HSPs: 1)
Name: scaffold1407
Description:

Target: scaffold1407; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 21 - 280
Target Start/End: Original strand, 1469 - 1727
Alignment:
21 atgggggagactgattctcccaaacccgtgacgggcgtcacagggtgtgacggtctgcttgtcacggggtggtgttggtgacagccaggtcgagttgaaa 120  Q
    ||||||||||||| |||| || |||||||||||| ||||||||||||||||| |||||| ||||||||||||||  |||    || ||||||||||| |     
1469 atgggggagactgcttcttccgaacccgtgacggacgtcacagggtgtgacgatctgctcgtcacggggtggtgacggtctgggc-aggtcgagttggag 1567  T
121 ggtgacggtcaacccgtcacatggtgtgacggccgtcaccctgaagctaaattctttaggacttcttcctttctttgttttctcgccgaatttcgtcatt 220  Q
    ||||||| ||||| ||||||| ||| |||||||||||||||||||||  ||||| | | |||||||| | |||||||||||||  | ||||| |||||||    
1568 ggtgacgatcaacacgtcacagggtatgacggccgtcaccctgaagcagaattcctcaagacttctttccttctttgttttcttactgaattccgtcatt 1667  T
221 tttgcgcatagaggcctttattgccgtgtacctgaaacatagccatacaacccagtataa 280  Q
    ||| |||||  ||||||||||||| ||||||||||||||||| |||||||||||| ||||    
1668 tttacgcatgaaggcctttattgctgtgtacctgaaacatagtcatacaacccagcataa 1727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0177 (Bit Score: 100; Significance: 2e-49; HSPs: 1)
Name: scaffold0177
Description:

Target: scaffold0177; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 21 - 280
Target Start/End: Complemental strand, 32376 - 32117
Alignment:
21 atgggggagactgattctcccaaacccgtgacgggcgtcacagggtgtgacggtctgcttgtcacggggtggtgttgg--tgacagccaggtcgag--tt 116  Q
    ||||||||||||| |||| || |||||||||||| ||||||||||||||||| |||||| |||||||| |||||  ||  ||   | |||||||||  ||    
32376 atgggggagactgcttcttccgaacccgtgacggacgtcacagggtgtgacgatctgctcgtcacggg-tggtgacggcttg---ggcaggtcgagagtt 32281  T
117 gaaaggtgacggtcaacccgtcacatggtgtgacggccgtcaccctgaagctaaattctttaggacttcttcctttctttgttttctcgccgaatttcgt 216  Q
    | | ||||||| ||||| ||||||| |||||||||||||||||||||||||  ||||| | | |||||||| | |||||||||||||  | ||||| |||    
32280 ggagggtgacgatcaacacgtcacagggtgtgacggccgtcaccctgaagcagaattcctcaagacttctttccttctttgttttcttactgaattccgt 32181  T
217 catttttgcgcatagaggcctttattgccgtgtacctgaaacatagccatacaacccagtataa 280  Q
    |||||||||||||  ||||||||||||| ||||||||||||||||| |||||||||||| ||||    
32180 catttttgcgcatgaaggcctttattgctgtgtacctgaaacatagacatacaacccagcataa 32117  T

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