View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21210_high_2 (Length: 609)
Name: NF21210_high_2
Description: NF21210
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21210_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 497; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 497; E-Value: 0
Query Start/End: Original strand, 1 - 593
Target Start/End: Complemental strand, 52780126 - 52779549
Alignment:
| Q |
1 |
taaaccactggccgtaaattttaacatcgagaacaaccaccggaaccgtgaaaacccaccatagaattaaataagtaatggttttgggagctatgaatgg |
100 |
Q |
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| T |
52780126 |
taaaccactggccgtaaattttaacatcgagaacaaccaccggaaccgtgaaaacccaccatagaattaaataagtaatggttttgggagctatgaatgg |
52780027 |
T |
|
| Q |
101 |
tgctgattgaagtaatagaaaccatgaaatccatggagcgaaaagatagttaactcctacatggtgtaagaactcttcttttaccatcttaaagaaaaat |
200 |
Q |
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| T |
52780026 |
tgctgattgaagtaatagaaaccatgaaatccatggagcgaaaagatagttaactcctacatggtgtaagaactcttcttttaccatcttaaagaaaaat |
52779927 |
T |
|
| Q |
201 |
aaacatcttaagaggtaaagaagagagagtaatgcgagtataaaaagagacatagaccatagtactatgaaaacagaggaaggaagcatgctaagcacgt |
300 |
Q |
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| T |
52779926 |
aaacatcttaagaggtaaagaagagagagtaatgcgagtataaaaagagacatagaccatagtactatgaaaacagaggaaggaagcatgctaagcacgt |
52779827 |
T |
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| Q |
301 |
gtcttgatttgcttgtgtcgtttgttggatcaattagtgttttccatagtaatgcttggccaccaaatgagaggctaattctgaaataacctgcatgaag |
400 |
Q |
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| T |
52779826 |
gtcttgatttgcttgtgtcgtttgttggatcaattagtgttttccatagtaatgcttggccaccaaatgagaggctaattctgaaataacctgcatgaag |
52779727 |
T |
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| Q |
401 |
nnnnnnnagtatacatgttaaggatcttattaaggatcgttttgtgaacattaacgaggttgatttttggttattgtggttcgtgatgnnnnnnnctatg |
500 |
Q |
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| T |
52779726 |
tttttttagtatacatgttatggatcttattaaggatcgttttgtgaacattaacgaggttgatttttggttattgtggttcgtgatgtttttttctatg |
52779627 |
T |
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| Q |
501 |
atgacaagctcaatgtttgattgggaaattttttgggttgcacattccatgttgattttcatattgtcaaactcatacaacaagagtagtatt |
593 |
Q |
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| T |
52779626 |
atgacaagctcaatgtttgattggga---------------acattccatgttgattttcatattgtcaaactcatacaacaagagtagtatt |
52779549 |
T |
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