View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21210_high_34 (Length: 237)
Name: NF21210_high_34
Description: NF21210
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21210_high_34 |
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Alignment Details
Target: chr6 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 11098344 - 11098565
Alignment:
| Q |
1 |
ccttaggtaataaggaaactcatcaaatgtaactttactatcttttccatcaacaacaagtctcttgagttcttcaacaatctgctcaccagaaacctcg |
100 |
Q |
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| T |
11098344 |
ccttaggtaataaggaaactcatcaaatgtaactttactatcttttccatcaacaacaagtctctttagttcttcaacaatctgctcaccagaaacctcg |
11098443 |
T |
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| Q |
101 |
tcgatatcgcgattccctccaacccatttctggacagcttgtcctgaactcaatccaagtccaacacctaatccaacaccaacactcaatgctgacnnnn |
200 |
Q |
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| T |
11098444 |
tcgatatcgcggatccctcctacccatttctggacagcttgtcctgaactcaatccaagtccaacacctaatccaacaccaacactcaatgctgacaaaa |
11098543 |
T |
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| Q |
201 |
nnncatgtttctgttccatacc |
222 |
Q |
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||||||||||||||||||| |
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| T |
11098544 |
aaacatgtttctgttccatacc |
11098565 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 7 - 70
Target Start/End: Complemental strand, 44931636 - 44931573
Alignment:
| Q |
7 |
gtaataaggaaactcatcaaatgtaactttactatcttttccatcaacaacaagtctcttgagt |
70 |
Q |
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|||||||||||| ||||||||||||||||||||||| |||||||||| || ||| |||||||| |
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| T |
44931636 |
gtaataaggaaagtcatcaaatgtaactttactatcctttccatcaatgactagtttcttgagt |
44931573 |
T |
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