View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21210_high_6 (Length: 435)
Name: NF21210_high_6
Description: NF21210
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21210_high_6 |
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Alignment Details
Target: chr8 (Bit Score: 311; Significance: 1e-175; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 18 - 430
Target Start/End: Original strand, 8577145 - 8577570
Alignment:
| Q |
18 |
atatagagtagtattgcatttcatttataggacttgagttggtatannnnnnncctacataaaaagtacttgcaaatttacctgtgaattcgtttcaaaa |
117 |
Q |
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| T |
8577145 |
atatggagtagtattgcatttcatttataggacttgagttggtatatttttttcctacataaaaagtacttgcaaatttacctgtgaattcgtttcaaaa |
8577244 |
T |
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| Q |
118 |
tgggttgttgttaatttcttgtgaattcgtttcaaatttacttgtgaaattacatgcaattgttttgcaggatgttaatttattgctcaatttttctaaa |
217 |
Q |
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| T |
8577245 |
tgggttgttgttaatttcttgtgaattcgtttcaaatttacttgtgaaattacatgcaattgttttgcag-atgttaatttattgctcaatttttctaaa |
8577343 |
T |
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| Q |
218 |
aaattctgaaaatatcctaaatatactagtttaagtgatccaagataagtgataacgtatatacacaattaggaatgtgattaaaattattgttagagtt |
317 |
Q |
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| T |
8577344 |
aaattctgaaaatatcctaaatataccagtttaagtgatccaagataagtgataacgtgtatacacaattaggaatgtgattaaaattattgttagagtt |
8577443 |
T |
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| Q |
318 |
gtaaaatatgtttgatgtttgattggtaactgaagttgctagatgattagtgt-----------------agttagttatgttaattagcaacactgttt |
400 |
Q |
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| T |
8577444 |
gtaaaata---ttgatgtttgattggtaactgaagttgctagatgattagtgtagttagttagctgactaagttagttatgttaattagcaacactgttt |
8577540 |
T |
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| Q |
401 |
tgcatcaagcttaactctcttcatctcact |
430 |
Q |
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| T |
8577541 |
tgcatcaagcttagctctcttcatttcact |
8577570 |
T |
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