View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21210_high_7 (Length: 393)

Name: NF21210_high_7
Description: NF21210
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21210_high_7
NF21210_high_7
[»] scaffold0178 (2 HSPs)
scaffold0178 (182-393)||(18486-18692)
scaffold0178 (228-357)||(19094-19226)
[»] chr2 (4 HSPs)
chr2 (182-347)||(41282855-41283019)
chr2 (193-356)||(41282649-41282812)
chr2 (228-357)||(1233749-1233879)
chr2 (182-243)||(33361052-33361111)
[»] chr4 (3 HSPs)
chr4 (1-94)||(52535440-52535533)
chr4 (182-250)||(5469961-5470027)
chr4 (183-227)||(45620874-45620918)
[»] chr5 (1 HSPs)
chr5 (181-324)||(120077-120218)
[»] chr3 (8 HSPs)
chr3 (6-94)||(49349811-49349899)
chr3 (181-245)||(8922888-8922950)
chr3 (181-245)||(41325826-41325888)
chr3 (181-245)||(50107572-50107634)
chr3 (190-245)||(1772880-1772933)
chr3 (182-245)||(8923629-8923690)
chr3 (182-245)||(23514488-23514549)
chr3 (182-245)||(34329130-34329191)
[»] chr8 (2 HSPs)
chr8 (182-245)||(38443039-38443100)
chr8 (182-226)||(38443618-38443662)
[»] chr7 (1 HSPs)
chr7 (201-245)||(48204975-48205017)
[»] chr1 (1 HSPs)
chr1 (182-245)||(1764521-1764582)


Alignment Details
Target: scaffold0178 (Bit Score: 151; Significance: 9e-80; HSPs: 2)
Name: scaffold0178
Description:

Target: scaffold0178; HSP #1
Raw Score: 151; E-Value: 9e-80
Query Start/End: Original strand, 182 - 393
Target Start/End: Original strand, 18486 - 18692
Alignment:
Q  182 catctttactccatttaaatttgctcaatttacaccatttaccatctcatggatgtgtgacatgcggaataaattaaacaaagggttggaattaaaacct 281  Q
    |||||||||||||||||| |||| ||||||||||||||||||||||  |||||||||||||||| |||||||||||||||||||| ||  ||||||||||    
T  18486 catctttactccatttaagtttgttcaatttacaccatttaccatc--atggatgtgtgacatgtggaataaattaaacaaagggctgagattaaaacct 18583  T
Q  282 tagaaaaaacaaacttgttactctcttgtatctgaaacaacacgctgcctcctttcttcttcttctcatcatcacctgcaaaagtaagaaatctgcaatt 381  Q
    |||||||||||||||||||||||||||||| |||||||||||||| |||||||   ||||||||||||||||||||||||||| ||||||||||||||||    
T  18584 tagaaaaaacaaacttgttactctcttgtagctgaaacaacacgccgcctcct---ttcttcttctcatcatcacctgcaaaaataagaaatctgcaatt 18680  T
Q  382 tgaactttttaa 393  Q
    ||||||||||||    
T  18681 tgaactttttaa 18692  T

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Target: scaffold0178; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 228 - 357
Target Start/End: Complemental strand, 19226 - 19094
Alignment:
Q  228 tcatggatgtgtgacatgcggaataaattaaacaaagggttggaattaaaaccttagaa--aaaacaaacttgttactctcttgtatctgaaacaacacg 325  Q
    |||||||||||||||||| | |||||||||||||||||| ||  ||||||| |||||||  ||||||| ||| |||||||||||||||| |||||| ||     
T  19226 tcatggatgtgtgacatgtgtaataaattaaacaaagggctgagattaaaaacttagaaaaaaaacaatcttattactctcttgtatctaaaacaagaca 19127  T
Q  326 c-tgcctcctttcttcttcttctcatcatcacc 357  Q
    | |||||||| |||||||||||||||| |||||    
T  19126 cttgcctcctgtcttcttcttctcatcgtcacc 19094  T

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Target: chr2 (Bit Score: 124; Significance: 1e-63; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 182 - 347
Target Start/End: Complemental strand, 41283019 - 41282855
Alignment:
Q  182 catctttactccatttaaatttgctcaatttacaccatttaccatctcatggatgtgtgacatgcggaataaattaaacaaagggttggaattaaaacct 281  Q
    |||||||||||||||||| ||||||||||||||| |||||||||||  |||||||||||||||| |||||||||||||||||||||||  ||||||||||    
T  41283019 catctttactccatttaagtttgctcaatttacatcatttaccatc--atggatgtgtgacatgtggaataaattaaacaaagggttgagattaaaacct 41282922  T
Q  282 tagaaaaaacaaacttgttactctcttgtatctgaaacaacacg-ctgcctcctttcttcttcttct 347  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||    
T  41282921 tagaaaaaacaaacttgttactctcttgtatctgaaacaacacgcctgccacctttcttcttcttct 41282855  T

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Target: chr2; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 193 - 356
Target Start/End: Original strand, 41282649 - 41282812
Alignment:
Q  193 catttaaatttgctcaatttacaccatttaccatctcatggatgtgtgacatgcggaataaattaaacaaagggttggaattaaaaccttagaaaaaa-c 291  Q
    ||||||| ||||||| |||||||||||||||||||  || ||||||||| ||| |||||||||| |||||||| |||  ||||||| | ||||||||| |    
T  41282649 catttaagtttgctccatttacaccatttaccatc--atagatgtgtgatatgtggaataaattgaacaaaggattgagattaaaaacatagaaaaaaac 41282746  T
Q  292 aaacttgttactctcttgtatctgaaacaacac-gctgcctcctttcttcttcttctcatcatcac 356  Q
    || ||| ||||| ||||||||||||||||||||   |||||||| ||||||||||||  |||||||    
T  41282747 aatcttattactttcttgtatctgaaacaacacatttgcctcctgtcttcttcttcttctcatcac 41282812  T

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Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 228 - 357
Target Start/End: Original strand, 1233749 - 1233879
Alignment:
Q  228 tcatggatgtgtgacatgcggaataaattaaacaaagggttggaattaaaaccttagaaaaaacaaacttgttactctcttgtatctgaaacaacac-gc 326  Q
    |||||||||||||||| | || | |||| ||| ||| ||||   ||||||||||||||||||||||||| |||  ||||||||||| ||| ||||||  |    
T  1233749 tcatggatgtgtgacacgtggcaaaaataaaataaatggttaagattaaaaccttagaaaaaacaaactagttcttctcttgtatccgaagcaacacacc 1233848  T
Q  327 tgcctcctttcttcttcttctcatcatcacc 357  Q
     | ||||||||||||||||||| || |||||    
T  1233849 agtctcctttcttcttcttctcttcgtcacc 1233879  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 182 - 243
Target Start/End: Original strand, 33361052 - 33361111
Alignment:
Q  182 catctttactccatttaaatttgctcaatttacaccatttaccatctcatggatgtgtgaca 243  Q
    ||||||| |||||||||  ||||||||||||| ||||||||||   ||||||||||||||||    
T  33361052 catctttgctccatttacctttgctcaatttataccatttacc--ttcatggatgtgtgaca 33361111  T

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Target: chr4 (Bit Score: 82; Significance: 1e-38; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 1 - 94
Target Start/End: Original strand, 52535440 - 52535533
Alignment:
Q  1 atcagaaagtaaaagagtgcaactatgaatcgttggagaagatgtttcggacacggaggatgaagcggctacaaatattggagggagataggga 94  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||| ||||||||||    
T  52535440 atcagaaagtaaaagagtgcaactatgaatcgttggagaagatgtttcgggcacggaggatgaagcggctacacatattggagagagataggga 52535533  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 182 - 250
Target Start/End: Complemental strand, 5470027 - 5469961
Alignment:
Q  182 catctttactccatttaaatttgctcaatttacaccatttaccatctcatggatgtgtgacatgcggaa 250  Q
    ||||||| |||||||||| |||||||||||||  ||||||||||  | |||||||||||||||| ||||    
T  5470027 catctttgctccatttaagtttgctcaatttatcccatttacca--ttatggatgtgtgacatgtggaa 5469961  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 183 - 227
Target Start/End: Original strand, 45620874 - 45620918
Alignment:
Q  183 atctttactccatttaaatttgctcaatttacaccatttaccatc 227  Q
    |||||| ||||||||||||||||||||||||   |||||||||||    
T  45620874 atctttgctccatttaaatttgctcaatttatctcatttaccatc 45620918  T

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Target: chr5 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 181 - 324
Target Start/End: Original strand, 120077 - 120218
Alignment:
Q  181 tcatctttactccatttaaatttgctcaatttacaccatttaccatctcatggatgtgtgacatgcggaataaattaaacaaagggttggaattaaaacc 280  Q
    |||||||| |||||||||  ||| |||||||||| ||||||  ||  | || |||| |||||||  |||| |||| ||| ||| |||||  ||||||||     
T  120077 tcatctttgctccatttagctttcctcaatttaccccattt--caagttatagatgcgtgacatatggaaaaaataaaataaatggttgagattaaaact 120174  T
Q  281 ttagaaaaaacaaacttgttactctcttgtatctgaaacaacac 324  Q
    |||||||||||||||||||| |||||||||||||||||||||||    
T  120175 ttagaaaaaacaaacttgttcctctcttgtatctgaaacaacac 120218  T

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Target: chr3 (Bit Score: 45; Significance: 2e-16; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 6 - 94
Target Start/End: Complemental strand, 49349899 - 49349811
Alignment:
Q  6 aaagtaaaagagtgcaactatgaatcgttggagaagatgtttcggacacggaggatgaagcggctacaaatattggagggagataggga 94  Q
    |||||||||| ||| |||||||||||||||||||||||| ||||| | ||||||||||||||| ||||  ||| |||  ||||||||||    
T  49349899 aaagtaaaagcgtggaactatgaatcgttggagaagatggttcgggctcggaggatgaagcggttacacgtatgggaaagagataggga 49349811  T

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Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 181 - 245
Target Start/End: Original strand, 8922888 - 8922950
Alignment:
Q  181 tcatctttactccatttaaatttgctcaatttacaccatttaccatctcatggatgtgtgacatg 245  Q
    ||||||||||||||||||  |||||||||||||| ||||||| ||  ||||||||||||||||||    
T  8922888 tcatctttactccatttaggtttgctcaatttaccccatttatca--tcatggatgtgtgacatg 8922950  T

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Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 181 - 245
Target Start/End: Original strand, 41325826 - 41325888
Alignment:
Q  181 tcatctttactccatttaaatttgctcaatttacaccatttaccatctcatggatgtgtgacatg 245  Q
    ||||||||||||||||||  |||||||||||||| ||||||| ||  ||||||||||||||||||    
T  41325826 tcatctttactccatttaggtttgctcaatttaccccatttatca--tcatggatgtgtgacatg 41325888  T

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Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 181 - 245
Target Start/End: Original strand, 50107572 - 50107634
Alignment:
Q  181 tcatctttactccatttaaatttgctcaatttacaccatttaccatctcatggatgtgtgacatg 245  Q
    ||||||||||| ||||||  |||||||||||||| ||||||| ||  ||||||||||||||||||    
T  50107572 tcatctttactacatttaggtttgctcaatttaccccatttatca--tcatggatgtgtgacatg 50107634  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 190 - 245
Target Start/End: Original strand, 1772880 - 1772933
Alignment:
Q  190 ctccatttaaatttgctcaatttacaccatttaccatctcatggatgtgtgacatg 245  Q
    |||||||||| |||||||||||||| ||||||||  | |||||||| |||||||||    
T  1772880 ctccatttaagtttgctcaatttaccccatttac--tatcatggatatgtgacatg 1772933  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 182 - 245
Target Start/End: Complemental strand, 8923690 - 8923629
Alignment:
Q  182 catctttactccatttaaatttgctcaatttacaccatttaccatctcatggatgtgtgacatg 245  Q
    ||||||| ||||||||   ||||||| |||||| ||||||||||  ||||||||||||||||||    
T  8923690 catctttgctccatttgggtttgctccatttaccccatttacca--tcatggatgtgtgacatg 8923629  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 182 - 245
Target Start/End: Complemental strand, 23514549 - 23514488
Alignment:
Q  182 catctttactccatttaaatttgctcaatttacaccatttaccatctcatggatgtgtgacatg 245  Q
    ||||||| ||||||||   |||||||||||||| ||||||||  | ||||||||||||||||||    
T  23514549 catctttgctccatttgcctttgctcaatttaccccatttac--tatcatggatgtgtgacatg 23514488  T

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Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 182 - 245
Target Start/End: Complemental strand, 34329191 - 34329130
Alignment:
Q  182 catctttactccatttaaatttgctcaatttacaccatttaccatctcatggatgtgtgacatg 245  Q
    ||||||| || ||||||  |||||||||||||| ||||||||  | ||||||||||||||||||    
T  34329191 catctttgcttcatttatttttgctcaatttactccatttac--tatcatggatgtgtgacatg 34329130  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 182 - 245
Target Start/End: Original strand, 38443039 - 38443100
Alignment:
Q  182 catctttactccatttaaatttgctcaatttacaccatttaccatctcatggatgtgtgacatg 245  Q
    ||||||| |||||||||| | ||||| |||||| ||||||||||  ||||||||||||||||||    
T  38443039 catctttgctccatttaagtctgctccatttaccccatttacca--tcatggatgtgtgacatg 38443100  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 182 - 226
Target Start/End: Complemental strand, 38443662 - 38443618
Alignment:
Q  182 catctttactccatttaaatttgctcaatttacaccatttaccat 226  Q
    ||||||| |||||||||| ||||||| |||||| |||||||||||    
T  38443662 catctttgctccatttaagtttgctccatttaccccatttaccat 38443618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 201 - 245
Target Start/End: Complemental strand, 48205017 - 48204975
Alignment:
Q  201 tttgctcaatttacaccatttaccatctcatggatgtgtgacatg 245  Q
    ||||||| |||||||||||||||||  ||||||||||||||||||    
T  48205017 tttgctccatttacaccatttacca--tcatggatgtgtgacatg 48204975  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 182 - 245
Target Start/End: Original strand, 1764521 - 1764582
Alignment:
Q  182 catctttactccatttaaatttgctcaatttacaccatttaccatctcatggatgtgtgacatg 245  Q
    ||||||| |||||||||| |||||||||||||| | ||||| ||  |||||||||| |||||||    
T  1764521 catctttgctccatttaagtttgctcaatttaccctatttatca--tcatggatgtatgacatg 1764582  T

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