View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21210_low_1 (Length: 884)
Name: NF21210_low_1
Description: NF21210
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21210_low_1 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 430; Significance: 0; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 430; E-Value: 0
Query Start/End: Original strand, 19 - 527
Target Start/End: Original strand, 13878854 - 13879344
Alignment:
| Q |
19 |
ctattacctttggtgctaattaaaactttgtatgtcctgtcgccaccatatatttgtttagcatgcacctgaaaattaaaagaacgtacatggagagaaa |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||| |
|
|
| T |
13878854 |
ctattacctttggtgctaattaaaactttgtatgtcctgtcgccaccatatattggttta------------------aaagaacgtacatggagagaaa |
13878935 |
T |
|
| Q |
119 |
accaattgccacagcagaatatcacttgattttcaatgatcttttctaacagctctaaatttaatgcatcaagcagttatgtgtgtacgcttcaatcaat |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
13878936 |
accaattgccacagcagaatatcacttgattttcaatgatcttttctaacagctctaaatttaatgcagcaagcagttatgtgtgtacgcttcaatcaat |
13879035 |
T |
|
| Q |
219 |
ataacaaaatttgaaaggtggatcgcaacaaaatagaaggcagattaagttgcatcaactagctatataattataatagcaaatgaaattgttaatcata |
318 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13879036 |
ataacaaaatttgaaaggtcgatcgcaacaaaatagaaggcagattaagttgcatcaactagctatataattataatagcaaatgaaattgttaatcata |
13879135 |
T |
|
| Q |
319 |
tatttataatattgattgatagcaattggtaattaatgtcaaatccagaaattggtacaaacagaacagaacactaattaactaactaaatagcttttta |
418 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13879136 |
tatttataatattgattgatagcaattggtaattaatgtcaaatccagaaattggtacaaacagaacagaacactaattaactaactaaatagcttttta |
13879235 |
T |
|
| Q |
419 |
gatctcaaatacatgcaaactaattcatcatttaaaatagtaactaaaaaactacttctctgttcatccctccctcttttaagtgaaacctaaaacatat |
518 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13879236 |
gatctcaaatacatgcaaactaattcatcatttaaaatagtaactaaaatactacttctctgttcatccctccctcttttaagtgaaacctaaaacatag |
13879335 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 589 - 874
Target Start/End: Original strand, 13879406 - 13879691
Alignment:
| Q |
589 |
cttgttcttgagcttaggaaccacaacttcaatgaaattgttctctatcattttggctttagtgttaacaaagtcgcagtgcttccctttcaagttaagt |
688 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13879406 |
cttgttcttgagcttaggaaccacaacttcaatgaaattgttctctatcattttggctttagtgttaacaaagtcgcagtgcttccctttcaagttaagt |
13879505 |
T |
|
| Q |
689 |
gttactgaaaacagatttcgaccgggaagaacatcctcaatcctgagagtaccgtgatcaacacagacatcaatctcttccttcctcacgttgtcagcga |
788 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13879506 |
gttactgaaaacagatttcgaccgggaagaacatcctcaatcctgagagtaccgtgatcaacacagacatcaatctcttccttcctcacgttgtcagcga |
13879605 |
T |
|
| Q |
789 |
caagattcgaccgcaaaatcacagactcctcagtctccgtaaaatcccagagaacaagatcatcatcatcgttgttgttgttgttg |
874 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||| |
|
|
| T |
13879606 |
caagattcgaccgcaaaatcacagactcctcagtctccgtaaaatcccagagaacaagatcatcatcatcatcgttgttgttgttg |
13879691 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 157; E-Value: 5e-83
Query Start/End: Original strand, 589 - 861
Target Start/End: Original strand, 13875189 - 13875461
Alignment:
| Q |
589 |
cttgttcttgagcttaggaaccacaacttcaatgaaattgttctctatcattttggctttagtgttaacaaagtcgcagtgcttccctttcaagttaagt |
688 |
Q |
| |
|
|||||| |||||||| |||||||||| ||||| |||||||||||||||||||||||||||||||||||||| |||| | |||||||||||||||| ||| |
|
|
| T |
13875189 |
cttgttgttgagcttgggaaccacaatttcaaggaaattgttctctatcattttggctttagtgttaacaacgtcgaaatgcttccctttcaagtcgagt |
13875288 |
T |
|
| Q |
689 |
gttactgaaaacagatttcgaccgggaagaacatcctcaatcctgagagtaccgtgatcaacacagacatcaatctcttccttcctcacgttgtcagcga |
788 |
Q |
| |
|
|| ||||||| |||||||||| |||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
13875289 |
gtacctgaaaatcgatttcgacctggaagagcatccttaatcctgagagtaccgtgatcaacacagacatcaatctcttccttcctcacgttgttggcga |
13875388 |
T |
|
| Q |
789 |
caagattcgaccgcaaaatcacagactcctcagtctccgtaaaatcccagagaacaagatcatcatcatcgtt |
861 |
Q |
| |
|
| |||||| |||| ||||||| ||||||||| |||||| |||||| ||||||||||||| || |||||||| |
|
|
| T |
13875389 |
ccagattcaaccgaaaaatcaaagactcctcggtctcctcaaaatcacagagaacaagataatagtcatcgtt |
13875461 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 157 - 219
Target Start/End: Original strand, 13874737 - 13874799
Alignment:
| Q |
157 |
atcttttctaacagctctaaatttaatgcatcaagcagttatgtgtgtacgcttcaatcaata |
219 |
Q |
| |
|
|||||||||||||||||||| | ||||||| |||||| ||||||||||||||||||||||||| |
|
|
| T |
13874737 |
atcttttctaacagctctaagtataatgcagcaagcaattatgtgtgtacgcttcaatcaata |
13874799 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 311 - 349
Target Start/End: Original strand, 13884996 - 13885034
Alignment:
| Q |
311 |
taatcatatatttataatattgattgatagcaattggta |
349 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
13884996 |
taatcatatatttataatattgattgataccaattggta |
13885034 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 391 - 472
Target Start/End: Original strand, 13885075 - 13885159
Alignment:
| Q |
391 |
actaattaactaactaaatagctttttagatctcaaatacat---gcaaactaattcatcatttaaaatagtaactaaaaaacta |
472 |
Q |
| |
|
|||||||||| |||||||| ||||||||||||| ||||||| || ||||||| | |||||||||||| |||||||| |||| |
|
|
| T |
13885075 |
actaattaaccaactaaatccctttttagatctctaatacattcatcatactaattaagcatttaaaatagcaactaaaatacta |
13885159 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University