View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21210_low_10 (Length: 351)
Name: NF21210_low_10
Description: NF21210
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21210_low_10 |
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Alignment Details
Target: chr8 (Bit Score: 220; Significance: 1e-121; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 19 - 332
Target Start/End: Original strand, 28571473 - 28571785
Alignment:
| Q |
19 |
atacgattgaatcaattcattcaaatctagaacataagtgtgaatcgattcataagttagagacttttaaagcactattttaaagaaaaatagggagtga |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28571473 |
atacgattgaatcaattcattcaaatctagaacataagtgtgaatcgattcataagttagagacttttaaagcactattttaaagaaaaatagggagtga |
28571572 |
T |
|
| Q |
119 |
atcgattcattcaacctcggaaaaggatttgtgaatcgattcataagtcaaagagttaaacctctt-nnnnnnncaattcattcaaatcataaacgaggt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
28571573 |
atcgattcattcaacctcggaaaaggatttgtgaatcgattcataagtcaaagagttaaacctcttaaaaaaaataattcattcaaatcataaacgaggt |
28571672 |
T |
|
| Q |
218 |
atgaaccgattcacttaacttaaagtgtaataaatcatgnnnnnnnnnattatgtgaattgattttcacataccccaaaattaannnnnnnnnnatgcta |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||| |
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| T |
28571673 |
atgaaccgattcacttaacttaaagtgtaataaatcatg--tttttttattatgtgaattgattttcacataccccaaaattaattttttttttatgcta |
28571770 |
T |
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| Q |
318 |
acataacttccaaaa |
332 |
Q |
| |
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||||||||||||||| |
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| T |
28571771 |
acataacttccaaaa |
28571785 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 19 - 332
Target Start/End: Original strand, 28579066 - 28579378
Alignment:
| Q |
19 |
atacgattgaatcaattcattcaaatctagaacataagtgtgaatcgattcataagttagagacttttaaagcactattttaaagaaaaatagggagtga |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28579066 |
atacgattgaatcaattcattcaaatctagaacataagtgtgaatcgattcataagttagagacttttaaagcactattttaaagaaaaatagggagtga |
28579165 |
T |
|
| Q |
119 |
atcgattcattcaacctcggaaaaggatttgtgaatcgattcataagtcaaagagttaaacctctt-nnnnnnncaattcattcaaatcataaacgaggt |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
28579166 |
atcgattcattcaacctcggaaaaggatttgtgaatcgattcataagtcaaagagttaaacctcttaaaaaaaataattcattcaaatcataaacgaggt |
28579265 |
T |
|
| Q |
218 |
atgaaccgattcacttaacttaaagtgtaataaatcatgnnnnnnnnnattatgtgaattgattttcacataccccaaaattaannnnnnnnnnatgcta |
317 |
Q |
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|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||| |
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| T |
28579266 |
atgaaccgattcacttaacttaaagtgtaataaatcatg--tttttttattatgtgaattgattttcacataccccaaaattaattttttttttatgcta |
28579363 |
T |
|
| Q |
318 |
acataacttccaaaa |
332 |
Q |
| |
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||||||||||||||| |
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|
| T |
28579364 |
acataacttccaaaa |
28579378 |
T |
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