View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21210_low_11 (Length: 342)
Name: NF21210_low_11
Description: NF21210
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21210_low_11 |
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Alignment Details
Target: chr8 (Bit Score: 166; Significance: 8e-89; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 166; E-Value: 8e-89
Query Start/End: Original strand, 23 - 302
Target Start/End: Complemental strand, 32140722 - 32140442
Alignment:
| Q |
23 |
cagagagagttttactttatatgacatcttaatgaccatgtaatacttaaatttggactaaatctaattttatttgagaggaaatttgaactaaatctta |
122 |
Q |
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| T |
32140722 |
cagagagagtttgactttatatgacattttaatgaccatgtaatacttaaatttggactaaatctaattttattttagaggaaatttgaactaaatctca |
32140623 |
T |
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| Q |
123 |
ttgaca--nnnnnnnnnacaaacccttaaatttcattgacatgttaaattgttagtctatttaattaatatttcaaattatttattttnnnnnnngagaa |
220 |
Q |
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| T |
32140622 |
ttgacaattttttttttacaaacccttaaatttcattgacatgttaaattgttagtctatttaattaatatttcaaattattta-tttaaaaaaagataa |
32140524 |
T |
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| Q |
221 |
tatgtaatatttttatatccttnnnnnnntgtaatactttttagcatatgatatcagatgcaatttttaatttcttaattaa |
302 |
Q |
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| T |
32140523 |
tatgtaatatttttatatccttaaaaaaatgtaatactttttagcatatgatatcaattgcaatttttaatttcttaattaa |
32140442 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 307 - 342
Target Start/End: Complemental strand, 32140417 - 32140382
Alignment:
| Q |
307 |
catgcaacacacaacacgtggatgatatttaaacca |
342 |
Q |
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| T |
32140417 |
catgcaacacacaacacgtggatgatatttaaacca |
32140382 |
T |
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