View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21210_low_13 (Length: 326)

Name: NF21210_low_13
Description: NF21210
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21210_low_13
NF21210_low_13
[»] chr3 (7 HSPs)
chr3 (130-326)||(2112425-2112626)
chr3 (18-63)||(2112646-2112691)
chr3 (207-258)||(25070682-25070733)
chr3 (207-258)||(26903241-26903292)
chr3 (207-258)||(36617748-36617799)
chr3 (219-271)||(12005417-12005469)
chr3 (207-275)||(24309967-24310035)
[»] chr4 (1 HSPs)
chr4 (207-259)||(1112090-1112142)
[»] chr2 (2 HSPs)
chr2 (207-283)||(34878578-34878654)
chr2 (207-283)||(4075533-4075609)
[»] chr8 (2 HSPs)
chr8 (207-263)||(29841126-29841182)
chr8 (207-258)||(45486166-45486217)
[»] chr7 (2 HSPs)
chr7 (207-258)||(43265905-43265956)
chr7 (207-258)||(39780969-39781020)
[»] scaffold0684 (1 HSPs)
scaffold0684 (192-283)||(4181-4272)
[»] scaffold0163 (1 HSPs)
scaffold0163 (192-283)||(3846-3937)
[»] chr6 (2 HSPs)
chr6 (207-258)||(18817003-18817054)
chr6 (207-258)||(24901772-24901823)
[»] chr1 (1 HSPs)
chr1 (207-258)||(1016976-1017027)
[»] scaffold0311 (1 HSPs)
scaffold0311 (207-259)||(806-858)
[»] chr5 (1 HSPs)
chr5 (208-252)||(7607231-7607275)


Alignment Details
Target: chr3 (Bit Score: 158; Significance: 5e-84; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 130 - 326
Target Start/End: Complemental strand, 2112626 - 2112425
Alignment:
Q  130 gacgaagtaacaactaagtttataaagaaaataatttctcactcatttgttgaaaataatttattactaactattacaagaacatatgtttctataaaag 229  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2112626 gacgaagtaacaactaagtttataaagagaataatttctcactcatttgttgaaaataatttattactaactattacaagaacatatgtttctataaaag 2112527  T
Q  230 ttacaagacaatcatttaaccattgatcatttatcttattacatatatgact-----ctgagaaaacacggtcaacacttgtaattgtcagtggcgaaac 324  Q
    ||  ||||||||||||||||||||||||||||||||||||||||| ||||||     ||||||||||||||| ||||||||||||||||| |||||||||    
T  2112526 ttttaagacaatcatttaaccattgatcatttatcttattacataaatgactcttacctgagaaaacacggttaacacttgtaattgtcattggcgaaac 2112427  T
Q  325 ca 326  Q
    ||    
T  2112426 ca 2112425  T

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Target: chr3; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 18 - 63
Target Start/End: Complemental strand, 2112691 - 2112646
Alignment:
Q  18 aaagttagtaaagtgagttcagtgaatcgtttaaaacaagagttca 63  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  2112691 aaagttagtaaagtgagttcagtgaatcgtttaaaacaagagttca 2112646  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 207 - 258
Target Start/End: Complemental strand, 25070733 - 25070682
Alignment:
Q  207 aagaacatatgtttctataaaagttacaagacaatcatttaaccattgatca 258  Q
    |||||||| | |||| |||||||||||||| | |||||||||||||||||||    
T  25070733 aagaacatctctttcaataaaagttacaagccgatcatttaaccattgatca 25070682  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 207 - 258
Target Start/End: Original strand, 26903241 - 26903292
Alignment:
Q  207 aagaacatatgtttctataaaagttacaagacaatcatttaaccattgatca 258  Q
    |||||||| | |||| |||||||||||||| | |||||||||||||||||||    
T  26903241 aagaacatctctttcaataaaagttacaagccgatcatttaaccattgatca 26903292  T

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Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 207 - 258
Target Start/End: Complemental strand, 36617799 - 36617748
Alignment:
Q  207 aagaacatatgtttctataaaagttacaagacaatcatttaaccattgatca 258  Q
    |||||||| | |||| |||||||||||||| | |||||||||||||||||||    
T  36617799 aagaacatctctttcaataaaagttacaagccgatcatttaaccattgatca 36617748  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 219 - 271
Target Start/End: Complemental strand, 12005469 - 12005417
Alignment:
Q  219 ttctataaaagttacaagacaatcatttaaccattgatcatttatcttattac 271  Q
    ||||||| | |||||||||| ||||||||||||||||||| | ||||| ||||    
T  12005469 ttctatatacgttacaagacgatcatttaaccattgatcactcatcttgttac 12005417  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 207 - 275
Target Start/End: Original strand, 24309967 - 24310035
Alignment:
Q  207 aagaacatatgtttctataaaagttacaagacaatcatttaaccattgatcatttatcttattacatat 275  Q
    |||||||| | |||||||  ||||||||||||| |||||||||||  ||||||  || |||||||||||    
T  24309967 aagaacatctctttctatgtaagttacaagacattcatttaaccaccgatcatccattttattacatat 24310035  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 207 - 259
Target Start/End: Original strand, 1112090 - 1112142
Alignment:
Q  207 aagaacatatgtttctataaaagttacaagacaatcatttaaccattgatcat 259  Q
    |||||||| | |||||||| |||||||||||||||||||||||||||||||||    
T  1112090 aagaacatgtatttctatataagttacaagacaatcatttaaccattgatcat 1112142  T

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Target: chr2 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 207 - 283
Target Start/End: Complemental strand, 34878654 - 34878578
Alignment:
Q  207 aagaacatatgtttctataaaagttacaagacaatcatttaaccattgatcatttatcttattacatatatgactct 283  Q
    |||||||||| |||||||| |||||||||||| |||||||||||||| |||| | || ||||||||||  |||||||    
T  34878654 aagaacatatatttctatataagttacaagacgatcatttaaccattaatcactcatattattacatagttgactct 34878578  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 207 - 283
Target Start/End: Original strand, 4075533 - 4075609
Alignment:
Q  207 aagaacatatgtttctataaaagttacaagacaatcatttaaccattgatcatttatcttattacatatatgactct 283  Q
    |||||||| | |||| |||||||||||||| | |||||||||||||||||||   || ||||||| || ||||||||    
T  4075533 aagaacatctctttcaataaaagttacaagccgatcatttaaccattgatcacccattttattacgtaaatgactct 4075609  T

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Target: chr8 (Bit Score: 37; Significance: 0.000000000007; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 207 - 263
Target Start/End: Complemental strand, 29841182 - 29841126
Alignment:
Q  207 aagaacatatgtttctataaaagttacaagacaatcatttaaccattgatcatttat 263  Q
    |||||||||| |||||||| ||||||||||||| ||||||||||| | |||||||||    
T  29841182 aagaacatatctttctatataagttacaagacactcatttaaccactaatcatttat 29841126  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 207 - 258
Target Start/End: Complemental strand, 45486217 - 45486166
Alignment:
Q  207 aagaacatatgtttctataaaagttacaagacaatcatttaaccattgatca 258  Q
    |||||||| | |||| |||||||||||||| | |||||||||||||||||||    
T  45486217 aagaacatctctttcaataaaagttacaagccgatcatttaaccattgatca 45486166  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 207 - 258
Target Start/End: Complemental strand, 43265956 - 43265905
Alignment:
Q  207 aagaacatatgtttctataaaagttacaagacaatcatttaaccattgatca 258  Q
    |||||||| | ||||||||||||||||||| | |||||||||||||||||||    
T  43265956 aagaacatctctttctataaaagttacaagccgatcatttaaccattgatca 43265905  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 207 - 258
Target Start/End: Complemental strand, 39781020 - 39780969
Alignment:
Q  207 aagaacatatgtttctataaaagttacaagacaatcatttaaccattgatca 258  Q
    |||||||| | |||| |||||||||||||| | |||||||||||||||||||    
T  39781020 aagaacatctctttcaataaaagttacaagccgatcatttaaccattgatca 39780969  T

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Target: scaffold0684 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0684
Description:

Target: scaffold0684; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 192 - 283
Target Start/End: Original strand, 4181 - 4272
Alignment:
Q  192 attactaactattacaagaacatatgtttctataaaagttacaagacaatcatttaaccattgatcatttatcttattacatatatgactct 283  Q
    |||||||| ||||  |||||||| | |||||||| | |||||||||||||||||| | |||||||||   ||||| |||| ||| |||||||    
T  4181 attactaattattttaagaacatctctttctatatatgttacaagacaatcatttgagcattgatcacccatcttgttacttatttgactct 4272  T

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Target: scaffold0163 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0163
Description:

Target: scaffold0163; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 192 - 283
Target Start/End: Complemental strand, 3937 - 3846
Alignment:
Q  192 attactaactattacaagaacatatgtttctataaaagttacaagacaatcatttaaccattgatcatttatcttattacatatatgactct 283  Q
    |||||||| ||||  |||||||| | |||||||| | |||||||||||||||||| | |||||||||   ||||| |||| ||| |||||||    
T  3937 attactaattattttaagaacatctctttctatatatgttacaagacaatcatttgagcattgatcacccatcttgttacttatttgactct 3846  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 207 - 258
Target Start/End: Original strand, 18817003 - 18817054
Alignment:
Q  207 aagaacatatgtttctataaaagttacaagacaatcatttaaccattgatca 258  Q
    |||||||| | |||| |||||||||||||| | |||||||||||||||||||    
T  18817003 aagaacatctctttcaataaaagttacaagccgatcatttaaccattgatca 18817054  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 207 - 258
Target Start/End: Original strand, 24901772 - 24901823
Alignment:
Q  207 aagaacatatgtttctataaaagttacaagacaatcatttaaccattgatca 258  Q
    |||||||| | |||| |||||||||||||| | |||||||||||||||||||    
T  24901772 aagaacatctctttcaataaaagttacaagccgatcatttaaccattgatca 24901823  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 207 - 258
Target Start/End: Complemental strand, 1017027 - 1016976
Alignment:
Q  207 aagaacatatgtttctataaaagttacaagacaatcatttaaccattgatca 258  Q
    |||||||| | |||| |||||||||||||| | |||||||||||||||||||    
T  1017027 aagaacatctctttcaataaaagttacaagccgatcatttaaccattgatca 1016976  T

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Target: scaffold0311 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0311
Description:

Target: scaffold0311; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 207 - 259
Target Start/End: Complemental strand, 858 - 806
Alignment:
Q  207 aagaacatatgtttctataaaagttacaagacaatcatttaaccattgatcat 259  Q
    |||||||||| |||||||| |||||||||||   ||||||| |||||||||||    
T  858 aagaacatatctttctatataagttacaagatggtcatttagccattgatcat 806  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 208 - 252
Target Start/End: Complemental strand, 7607275 - 7607231
Alignment:
Q  208 agaacatatgtttctataaaagttacaagacaatcatttaaccat 252  Q
    ||||||| | |||||||| ||||||||||||| ||||||||||||    
T  7607275 agaacatctctttctatataagttacaagacactcatttaaccat 7607231  T

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