View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21210_low_15 (Length: 298)
Name: NF21210_low_15
Description: NF21210
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21210_low_15 |
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Alignment Details
Target: chr3 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 18 - 284
Target Start/End: Complemental strand, 4036561 - 4036295
Alignment:
| Q |
18 |
gtggtgtgagctcatgcaatttcaacctaacctatggcagttcctctattgcagctaacttggtacaagacactattaccttagccactgacccagttcc |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
4036561 |
gtggtgtgagctcatgcaatttcaacctaacctatggcagttcctctattgcagctaacttggtacaagacactattaccttagccactgaccccgttcc |
4036462 |
T |
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| Q |
118 |
tagctacacattcggttgtgtttcaaaaaccacaggcacctctgccccaccacaaggtctattgggcttgggccgaggcccgttgtcacttttgtctcaa |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4036461 |
tagctacacattcggttgtgtttcaaaaaccacaggcacctctgccccaccacaaggtctattgggcttgggccgaggcccgttgtcacttttgtctcaa |
4036362 |
T |
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| Q |
218 |
acccaaaacctctatcagtccacattttcttactgcttgccaagtttcaagtctcttaacttctctg |
284 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
4036361 |
acccaaaacctctatcagtccacattctcttactgcttgccaagtttcaagtctcttaacttctctg |
4036295 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 255; Significance: 1e-142; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 18 - 284
Target Start/End: Original strand, 13951142 - 13951408
Alignment:
| Q |
18 |
gtggtgtgagctcatgcaatttcaacctaacctatggcagttcctctattgcagctaacttggtacaagacactattaccttagccactgacccagttcc |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
13951142 |
gtggtgtgagctcatgcaatttcaacctaacctatggcagttcctctattgcagctaacttggtacaagacactattaccttagccaccgacccagttcc |
13951241 |
T |
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| Q |
118 |
tagctacacattcggttgtgtttcaaaaaccacaggcacctctgccccaccacaaggtctattgggcttgggccgaggcccgttgtcacttttgtctcaa |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13951242 |
tagctacacattcggttgtgtttcaaaaaccacaggcacctctgccccaccacaaggtctattgggcttgggccgaggcccgttgtcacttttgtctcaa |
13951341 |
T |
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| Q |
218 |
acccaaaacctctatcagtccacattttcttactgcttgccaagtttcaagtctcttaacttctctg |
284 |
Q |
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|||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||| |
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| T |
13951342 |
acccaaaacctctatcagtccacattctcttattgcttgccaagtttcaagtctcttaacttctctg |
13951408 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 50 - 279
Target Start/End: Original strand, 14703608 - 14703837
Alignment:
| Q |
50 |
tatggcagttcctctattgcagctaacttggtacaagacactattaccttagccactgacccagttcctagctacacattcggttgtgtttcaaaaacca |
149 |
Q |
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||||| ||||| || |||||||||| |||| |||||||| ||||| |||| ||||||||| |||| | ||||| || || |||||| ||||| | |
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| T |
14703608 |
tatggtagttcttccattgcagctagtgtggtccaagacacacttaccctagcaactgacccaattccagggtacacttttggctgtgttaacaaaacaa |
14703707 |
T |
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| Q |
150 |
caggcacctctgccccaccacaaggtctattgggcttgggccgaggcccgttgtcacttttgtctcaaacccaaaacctctatcagtccacattttctta |
249 |
Q |
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|||| | || || |||| |||||| ||||||||||||||||||||||| ||||| || ||||| |||| |||||| ||||| |||||||||| ||||| |
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| T |
14703708 |
caggaagttcagcaccacaacaagggctattgggcttgggccgaggcccattgtcgctcttgtcccaaagccaaaatctctacaagtccacattctctta |
14703807 |
T |
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| Q |
250 |
ctgcttgccaagtttcaagtctcttaactt |
279 |
Q |
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||| ||||| || || ||||| ||||||| |
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| T |
14703808 |
ctgtttgcctagctttaagtcgattaactt |
14703837 |
T |
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