View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21210_low_16 (Length: 293)
Name: NF21210_low_16
Description: NF21210
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21210_low_16 |
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Alignment Details
Target: chr6 (Bit Score: 159; Significance: 1e-84; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 16 - 284
Target Start/End: Original strand, 32314801 - 32315076
Alignment:
| Q |
16 |
taatatatgaagcc-tctaatctgtctttgtttgtta---caagctatgtcgcattgacattttagattgaacatgtgttcagtgtcgaacacatttatt |
111 |
Q |
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| T |
32314801 |
taatatatgaagccctctaatctgtctttgtttgttattacaagctatgtcgcattgatattttagattgaacatgtgttcaatgtcgaacacatttatt |
32314900 |
T |
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| Q |
112 |
ggt-----acagaggcagtaacaacaacaccgatttcatcaatatggtgtgatcaagatgttcaaatggagtacactatcattcgtttagataacttttg |
206 |
Q |
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| T |
32314901 |
ggtgtgtgacacaggcaataacaacaacaccgatttcatcaatatggtgtgatcaagatgttcaaa-aaagtacactatcatt-aattagataacttttg |
32314998 |
T |
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| Q |
207 |
aagaacnnnnnnncggcgcaaaaatattagaaggccaacaaaatccacaaaatcagtacgttagattcctttttcatc |
284 |
Q |
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| T |
32314999 |
aagaactttttttcggtgcaaaaatattggaaggccaacaaaatccacaaaatcagtacgttagattcctttttcatc |
32315076 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 28 - 83
Target Start/End: Original strand, 32314526 - 32314581
Alignment:
| Q |
28 |
cctctaatctgtctttgtttgttacaagctatgtcgcattgacattttagattgaa |
83 |
Q |
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| T |
32314526 |
cctctaatccgtctttgtttgttataagctatgtagcacatacattttagattgaa |
32314581 |
T |
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