View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21210_low_17 (Length: 290)

Name: NF21210_low_17
Description: NF21210
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21210_low_17
NF21210_low_17
[»] chr3 (8 HSPs)
chr3 (1-280)||(53058914-53059195)
chr3 (2-262)||(53062113-53062379)
chr3 (1-254)||(53067876-53068126)
chr3 (3-261)||(53340940-53341201)
chr3 (68-261)||(37418210-37418400)
chr3 (88-182)||(53972116-53972210)
chr3 (99-168)||(23224663-23224732)
chr3 (100-164)||(49857857-49857921)
[»] chr7 (10 HSPs)
chr7 (68-254)||(31013642-31013828)
chr7 (79-175)||(11377380-11377476)
chr7 (76-131)||(11374242-11374297)
chr7 (69-182)||(12646303-12646416)
chr7 (73-175)||(12539862-12539964)
chr7 (88-176)||(47606602-47606690)
chr7 (88-178)||(20001155-20001245)
chr7 (75-175)||(12483384-12483484)
chr7 (75-175)||(12504814-12504914)
chr7 (73-128)||(12623777-12623833)
[»] chr2 (2 HSPs)
chr2 (63-203)||(6687163-6687306)
chr2 (140-196)||(44253247-44253303)
[»] chr8 (2 HSPs)
chr8 (76-175)||(35396089-35396188)
chr8 (103-178)||(5387801-5387876)
[»] chr4 (1 HSPs)
chr4 (91-164)||(56164454-56164527)
[»] chr1 (1 HSPs)
chr1 (59-131)||(15330472-15330544)


Alignment Details
Target: chr3 (Bit Score: 263; Significance: 1e-147; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 263; E-Value: 1e-147
Query Start/End: Original strand, 1 - 280
Target Start/End: Complemental strand, 53059195 - 53058914
Alignment:
Q  1 cgcgatagcatgattgagtaaacatgactgcaaagagtggtttcgttcatgaaggctgtttggtcgatgaaatcga--gagtgaggacagagagccacaa 98  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||| |||||||||||    
T  53059195 cgcgatagcatgattgagtaaacatgactgcaaagagtggtttcgttcatgaaggctgtttggtcgatgaaatcgttcgagtgaggactgagagccacaa 53059096  T
Q  99 tggtttccacctcttggagaggatgcttgtggcgacggtgtctttggttgggagaaaggagagaatgtgacagataattgagtccggaagggagctaacc 198  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53059095 tggtttccacctcttggagaggatgcttgtggcgacggtgtctttggttgggagaaaggagagaatgtgacagataattgagtccggaagggagctaacc 53058996  T
Q  199 ctgtcacactcttcaattggaatcgatgatgatcgctgcttcttcgacttggacatggcagttaataatattattgcctttg 280  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53058995 ctgtcacactcttcaattggaatcgatgatgatcgctgcttcttcgacttggacatggcagttaataatattattgcctttg 53058914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 171; E-Value: 7e-92
Query Start/End: Original strand, 2 - 262
Target Start/End: Complemental strand, 53062379 - 53062113
Alignment:
Q  2 gcgatagcatgattgagtaaacatgactgcaaagagtggtttcgttcatgaaggctgtttggtcgatgaaatcgagagtgaggacagagagccacaatgg 101  Q
    |||||||||||| |||||||||||||||||||||||  |||   ||| |||||  ||  |||||| ||||||||||||||| |||| ||||||| |||||    
T  53062379 gcgatagcatgactgagtaaacatgactgcaaagagatgttgtcttcgtgaagtttgggtggtcggtgaaatcgagagtgaagacatagagccataatgg 53062280  T
Q  102 tttccacctcttggagaggatgcttgtggcgacggtgtctttggttgggagaaaggagagaatgtgacagat-----aattgagtccggaagggag-cta 195  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     | ||||||| ||||||||| |||    
T  53062279 tttccacctcttggagaggatgcttgtggcgacggtgtctttggttgggagaaaggagagaatgtgacagatagttgagttgagtctggaagggagacta 53062180  T
Q  196 accctgtcacactcttcaattggaatcgatgatgatcgctgcttcttcgacttggacatggcagtta 262  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53062179 accctgtcacactcttcaattggaatcgatgatgatcgctgcttcttcgacttggacatggcagtta 53062113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 1 - 254
Target Start/End: Complemental strand, 53068126 - 53067876
Alignment:
Q  1 cgcgatagcatgattgagtaaacatgactgcaaagagtggtttcgttcatgaaggctgtttggtcgatgaaatcgagagtgaggacagagagccacaatg 100  Q
    ||||||||||||| |||||||||   |||||||| |||||||   ||| |||||  | | || ||| |||||| |||||||| ||| |||||||| ||||    
T  53068126 cgcgatagcatgactgagtaaaccatactgcaaatagtggttgttttcgtgaagattatgtgatcggtgaaattgagagtgaagactgagagccataatg 53068027  T
Q  101 gtttccacctcttggagaggatgcttgtggcgacggtgtctttggttgggagaaaggagagaatgtgacagataattgagtccggaagggagctaaccct 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||| |    
T  53068026 gtttccacctcttggagaggatgcttgtggcgacggtgtctttggttgggagaaaggagagaatgtgatagataatcgagtccggaagggagctaacctt 53067927  T
Q  201 gtcacactcttcaattggaatcgatgatgatcgctgcttcttcgacttggacat 254  Q
    ||  | |||||| |||||||||||   ||||||| |||||||||||||||||||    
T  53067926 gttgcgctcttctattggaatcga---tgatcgccgcttcttcgacttggacat 53067876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 124; E-Value: 8e-64
Query Start/End: Original strand, 3 - 261
Target Start/End: Original strand, 53340940 - 53341201
Alignment:
Q  3 cgatagcatgattgagtaaacatgactgcaaagagtggtttcgttcatgaaggctgtttggtcgatgaaatcgagagtgaggacagagagccacaatggt 102  Q
    |||||||| || |||||||| ||||||||||| |||||||   | | |||||  ||| || ||| | ||||||||||||||||| ||||  || ||||||    
T  53340940 cgatagcaagactgagtaaatatgactgcaaatagtggttatttccgtgaagattgtgtgatcggtaaaatcgagagtgaggactgagatacataatggt 53341039  T
Q  103 ttccacctcttggagaggatgcttgtggcgacggtgtctttggttgggagaaaggagagaatgtgacagataattgagtccggaagggagctaaccctg- 201  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||     
T  53341040 ttccacctctttgagaggatgcttgtggcgacggtgtctttggttgggagaaaggagagaatgtgacagataattgagtctggaagggagctaaccctgt 53341139  T
Q  202 -----tcacactcttcaattggaatcgatgatgatcgctgcttcttcgacttggacatggcagtt 261  Q
         ||||||||||| ||||| |||   ||||||||||||||||| ||||| ||||| ||||||    
T  53341140 cgtactcacactcttctattggtatc---gatgatcgctgcttcttggactttgacatcgcagtt 53341201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 68 - 261
Target Start/End: Complemental strand, 37418400 - 37418210
Alignment:
Q  68 tgaaatcgagagtgaggacagagagccacaatggtttccacctcttggagaggatgcttgtggcgacggtgtctttggttgggagaaaggagagaatgtg 167  Q
    |||||||||| |||| ||| |||||||||||||| ||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| ||    
T  37418400 tgaaatcgagggtgaagactgagagccacaatgggttccacctctttgagaggatgcttgtggcgacagtgtctttggttgggagaaaggagagaatatg 37418301  T
Q  168 acagataattgagtccggaagggagctaaccctgtcacactcttcaattggaatcgatgatgatcgctgcttcttcgacttggacatggcagtt 261  Q
    ||||||||||||||| |||||||||||||||||||| |||| |||  ||||||||    ||||||| |||||||||||||||||||| ||||||    
T  37418300 acagataattgagtctggaagggagctaaccctgtcgcacttttctgttggaatc---catgatcgttgcttcttcgacttggacatcgcagtt 37418210  T

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Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 88 - 182
Target Start/End: Original strand, 53972116 - 53972210
Alignment:
Q  88 gagagccacaatggtttccacctcttggagaggatgcttgtggcgacggtgtctttggttgggagaaaggagagaatgtgacagataattgagtc 182  Q
    |||| ||| ||||| ||||||||||| ||||||||| |||||| | ||| |||||||||||| ||||| ||||| |||| | |||||||||||||    
T  53972116 gagatccataatggcttccacctctttgagaggatggttgtgggggcggagtctttggttggaagaaaagagagtatgtaagagataattgagtc 53972210  T

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Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 99 - 168
Target Start/End: Original strand, 23224663 - 23224732
Alignment:
Q  99 tggtttccacctcttggagaggatgcttgtggcgacggtgtctttggttgggagaaaggagagaatgtga 168  Q
    ||||||||| ||||  ||||| ||||||||| || | ||||||||||| || ||| ||||||||||||||    
T  23224663 tggtttccatctctctgagagaatgcttgtgacggctgtgtctttggtgggaagacaggagagaatgtga 23224732  T

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Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 100 - 164
Target Start/End: Original strand, 49857857 - 49857921
Alignment:
Q  100 ggtttccacctcttggagaggatgcttgtggcgacggtgtctttggttgggagaaaggagagaat 164  Q
    |||||||||||||||||||||| | ||||||||  || |||||| |  || ||||||||||||||    
T  49857857 ggtttccacctcttggagaggacggttgtggcggtggcgtctttcgacggaagaaaggagagaat 49857921  T

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Target: chr7 (Bit Score: 127; Significance: 1e-65; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 68 - 254
Target Start/End: Complemental strand, 31013828 - 31013642
Alignment:
Q  68 tgaaatcgagagtgaggacagagagccacaatggtttccacctcttggagaggatgcttgtggcgacggtgtctttggttgggagaaaggagagaatgtg 167  Q
    ||||||||||||||| ||| |||||||| ||||||||||||||||| || |||||||||||||||||||||||||||||||| |||||||||||||||||    
T  31013828 tgaaatcgagagtgaagactgagagccataatggtttccacctctttgaaaggatgcttgtggcgacggtgtctttggttggtagaaaggagagaatgtg 31013729  T
Q  168 acagataattgagtccggaagggagctaaccctgtcacactcttcaattggaatcgatgatgatcgctgcttcttcgacttggacat 254  Q
    |||||||||||||||||||||||||||| ||||||| |||||||| |||||||||||||||    | | ||||||||||||||||||    
T  31013728 acagataattgagtccggaagggagctatccctgtcgcactcttctattggaatcgatgatcgctgattcttcttcgacttggacat 31013642  T

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Target: chr7; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 79 - 175
Target Start/End: Complemental strand, 11377476 - 11377380
Alignment:
Q  79 gtgaggacagagagccacaatggtttccacctcttggagaggatgcttgtggcgacggtgtctttggttgggagaaaggagagaatgtgacagataa 175  Q
    |||||||| |||||||||||||| ||||| ||||||||||||||||| |||||| | |  |||||||| || ||||| ||||| ||||| |||||||    
T  11377476 gtgaggacggagagccacaatgggttccatctcttggagaggatgctagtggcggcagattctttggtaggaagaaaagagaggatgtggcagataa 11377380  T

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Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 76 - 131
Target Start/End: Complemental strand, 11374297 - 11374242
Alignment:
Q  76 agagtgaggacagagagccacaatggtttccacctcttggagaggatgcttgtggc 131  Q
    ||||||||||| |||||||||||||| ||||| ||||||||||||||||| |||||    
T  11374297 agagtgaggacggagagccacaatgggttccatctcttggagaggatgctagtggc 11374242  T

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Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 69 - 182
Target Start/End: Complemental strand, 12646416 - 12646303
Alignment:
Q  69 gaaatcgagagtgaggacagagagccacaatggtttccacctcttggagaggatgcttgtggcgacggtgtctttggttgggagaaaggagagaatgtga 168  Q
    ||||| |||||||||||  ||  ||||||| |||||||| || |||||||||||| |||| ||| |||  | || ||| |||||||| |||||||||||     
T  12646416 gaaatggagagtgaggagtgaatgccacaaaggtttccatcttttggagaggatggttgttgcggcggattgttgggtagggagaaatgagagaatgtgg 12646317  T
Q  169 cagataattgagtc 182  Q
    |||||||| |||||    
T  12646316 cagataatggagtc 12646303  T

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Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 73 - 175
Target Start/End: Complemental strand, 12539964 - 12539862
Alignment:
Q  73 tcgagagtgaggacagagagccacaatggtttccacctcttggagaggatgcttgtggcgacggtgtctttggttgggagaaaggagagaatgtgacaga 172  Q
    ||||||||||  || ||| |||||||||| ||||| || |||||||| |||||||||||  | |  | |||||| |||||||| ||||||||||| ||||    
T  12539964 tcgagagtgaaaactgagtgccacaatggattccatcttttggagagaatgcttgtggcagcagattgtttggtagggagaaaagagagaatgtggcaga 12539865  T
Q  173 taa 175  Q
    |||    
T  12539864 taa 12539862  T

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Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 88 - 176
Target Start/End: Original strand, 47606602 - 47606690
Alignment:
Q  88 gagagccacaatggtttccacctcttggagaggatgcttgtggcgacggtgtctttggttgggagaaaggagagaatgtgacagataat 176  Q
    |||||||| | ||| ||||| ||||| |||||||||||||| ||  || ||  ||||||||||||||| || ||||||||||| |||||    
T  47606602 gagagccatagtgggttccatctctttgagaggatgcttgtagctgcgctgagtttggttgggagaaaagatagaatgtgacatataat 47606690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 88 - 178
Target Start/End: Original strand, 20001155 - 20001245
Alignment:
Q  88 gagagccacaatggtttccacctcttggagaggatgcttgtggcgacggtgtctttggttgggagaaaggagagaatgtgacagataattg 178  Q
    |||||||| | ||||||||| ||||| |||||||||||||||||  | | || ||| || |||||||| || || |||||||| |||||||    
T  20001155 gagagccatattggtttccatctcttagagaggatgcttgtggcagcagagttttttgtcgggagaaaagaaaggatgtgacaaataattg 20001245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 75 - 175
Target Start/End: Complemental strand, 12483484 - 12483384
Alignment:
Q  75 gagagtgaggacagagagccacaatggtttccacctcttggagaggatgcttgtggcgacggtgtctttggttgggagaaaggagagaatgtgacagata 174  Q
    ||||||||  || ||| |||||||||| ||||| || |||||||| |||||||||||  | |  | |||||| |||||||| || |||||||| ||||||    
T  12483484 gagagtgaaaactgagtgccacaatggattccatcttttggagagaatgcttgtggcagcagattgtttggtagggagaaaagaaagaatgtggcagata 12483385  T
Q  175 a 175  Q
    |    
T  12483384 a 12483384  T

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Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 75 - 175
Target Start/End: Complemental strand, 12504914 - 12504814
Alignment:
Q  75 gagagtgaggacagagagccacaatggtttccacctcttggagaggatgcttgtggcgacggtgtctttggttgggagaaaggagagaatgtgacagata 174  Q
    ||||||||  || ||| |||||||||| ||||| || |||||||| |||||||||||  | |  | |||||| |||||||| || |||||||| ||||||    
T  12504914 gagagtgaaaactgagtgccacaatggattccatcttttggagagaatgcttgtggcagcagattgtttggtagggagaaaagaaagaatgtggcagata 12504815  T
Q  175 a 175  Q
    |    
T  12504814 a 12504814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 73 - 128
Target Start/End: Original strand, 12623777 - 12623833
Alignment:
Q  73 tcgagagtgaggacagagagccacaatgg-tttccacctcttggagaggatgcttgt 128  Q
    ||||||||||| || ||||||||||| || |||||| || |||||||||||||||||    
T  12623777 tcgagagtgagaactgagagccacaacggatttccatcttttggagaggatgcttgt 12623833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 78; Significance: 2e-36; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 63 - 203
Target Start/End: Complemental strand, 6687306 - 6687163
Alignment:
Q  63 gtcgatgaaatcgagagtgaggacagagagccacaatggtttccacctcttggagaggatgcttgtggcgacgg---tgtctttggttgggagaaaggag 159  Q
    |||||||||||||||||| | ||| |||||||| ||||||||||| ||||| |||||||||||||||||||| |   ||||||||||||| ||||| |||    
T  6687306 gtcgatgaaatcgagagttaagactgagagccataatggtttccatctcttcgagaggatgcttgtggcgacagtactgtctttggttggaagaaatgag 6687207  T
Q  160 agaatgtgacagataattgagtccggaagggagctaaccctgtc 203  Q
    ||||| ||||| ||||||||||  ||||||||||||||||||||    
T  6687206 agaatatgacaaataattgagtatggaagggagctaaccctgtc 6687163  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 140 - 196
Target Start/End: Complemental strand, 44253303 - 44253247
Alignment:
Q  140 ctttggttgggagaaaggagagaatgtgacagataattgagtccggaagggagctaa 196  Q
    |||||||||| ||||| |||||||||||| | |||||||| || |||| ||||||||    
T  44253303 ctttggttggaagaaaagagagaatgtgagatataattgaatctggaaaggagctaa 44253247  T

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Target: chr8 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 76 - 175
Target Start/End: Complemental strand, 35396188 - 35396089
Alignment:
Q  76 agagtgaggacagagagccacaatggtttccacctcttggagaggatgcttgtggcgacggtgtctttggttgggagaaaggagagaatgtgacagataa 175  Q
    ||||||||||| |||||||||||||| ||||| ||||| ||||||||||| |||| | | |  | |||||| |||||||| ||||||||||| |||||||    
T  35396188 agagtgaggacggagagccacaatgggttccatctcttagagaggatgctagtggtggcagattgtttggtagggagaaacgagagaatgtggcagataa 35396089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 103 - 178
Target Start/End: Original strand, 5387801 - 5387876
Alignment:
Q  103 ttccacctcttggagaggatgcttgtggcgacggtgtctttggttgggagaaaggagagaatgtgacagataattg 178  Q
    ||||||||| | |||||||||||||||| | | |||| |||||| || ||||| ||||||||| |||| |||||||    
T  5387801 ttccacctcgttgagaggatgcttgtggtggccgtgtgtttggtaggaagaaaagagagaatgagacaaataattg 5387876  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 91 - 164
Target Start/End: Complemental strand, 56164527 - 56164454
Alignment:
Q  91 agccacaatggtttccacctcttggagaggatgcttgtggcgacggtgtctttggttgggagaaaggagagaat 164  Q
    ||||| ||||| ||||||  ||| ||||||| |||||||||||| | |||||||||||||||||| ||||||||    
T  56164527 agccataatggattccactgcttcgagaggacgcttgtggcgaccgagtctttggttgggagaaaagagagaat 56164454  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 59 - 131
Target Start/End: Original strand, 15330472 - 15330544
Alignment:
Q  59 tttggtcgatgaaatcgagagtgaggacagagagccacaatggtttccacctcttggagaggatgcttgtggc 131  Q
    ||||||||  ||| ||||||||||| || ||  |||||||||| | ||| || ||||||||||||||||||||    
T  15330472 tttggtcgtcgaagtcgagagtgagaactgaatgccacaatgggtaccatcttttggagaggatgcttgtggc 15330544  T

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