View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21210_low_23 (Length: 270)
Name: NF21210_low_23
Description: NF21210
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21210_low_23 |
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Alignment Details
Target: chr4 (Bit Score: 232; Significance: 1e-128; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 260
Target Start/End: Original strand, 23595410 - 23595669
Alignment:
| Q |
1 |
ttcactgatacagaacgtttgatcggtgatgctgctaagaatcaggttgctatgaaccctactaacactgttttcggtaagtattctcaagttcttgatc |
100 |
Q |
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| T |
23595410 |
ttcactgatacagaacgtttgatcggtgatgcagccaagaatcaagttgctatgaaccctaccaacactgttttcggtaagtattctcaagttcttgatc |
23595509 |
T |
|
| Q |
101 |
gttgattttccaaagtttttattctgtttcagtatttgtttctttaatgtcacaattaatcaagcatacatgatttgaaatttctaatgcataaggtaga |
200 |
Q |
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| T |
23595510 |
gttgattttccgaagtttttattctgtttcagtatttgtttctttaatgtcacaattaatcaagcatgcatgatttgaaatttctaatgcataaggtaga |
23595609 |
T |
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| Q |
201 |
aaagtaaatgtaattgctcatcctgataaaattgctgatcttcatcttgattaggttctt |
260 |
Q |
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| T |
23595610 |
aaagtaaatgtaattgctcatcctgataaaattgttgatcttcatcttgattaggttctt |
23595669 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 1 - 129
Target Start/End: Original strand, 23586577 - 23586711
Alignment:
| Q |
1 |
ttcactgatacagaacgtttgatcggtgatgctgctaagaatcaggttgctatgaaccctactaacactgttttcggtaagtattc------tcaagttc |
94 |
Q |
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| T |
23586577 |
ttcactgatacagaacgtttgatcggtgatgctgctaagaatcaggttgctatgaaccctactaacactgttttcggtaagtactcttaaaatcaacttc |
23586676 |
T |
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| Q |
95 |
ttgatcgttgattttccaaagtttttattctgttt |
129 |
Q |
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| T |
23586677 |
ttaatcctttattttctgaagtttttattctgttt |
23586711 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 50; Significance: 1e-19; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 8016348 - 8016425
Alignment:
| Q |
1 |
ttcactgatacagaacgtttgatcggtgatgctgctaagaatcaggttgctatgaaccctactaacactgttttcggt |
78 |
Q |
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|||||||||| ||| | |||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||| |
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| T |
8016348 |
ttcactgatagtgaaaggttgatcggtgatgctgctaagaatcaggttgcgatgaaccctgttaacactgttttcggt |
8016425 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 8104112 - 8104033
Alignment:
| Q |
1 |
ttcactgatacagaacgtttgatcggtgatgctgctaagaatcaggttgctatgaaccctactaacactgttttcggtaa |
80 |
Q |
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|||||||||| ||| | |||||||||||||||||||||||||||||||| ||||| || || ||||| ||||| ||||| |
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| T |
8104112 |
ttcactgatagtgaaaggttgatcggtgatgctgctaagaatcaggttgcgatgaatccaaccaacaccgtttttggtaa |
8104033 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 22 - 74
Target Start/End: Complemental strand, 39986990 - 39986938
Alignment:
| Q |
22 |
atcggtgatgctgctaagaatcaggttgctatgaaccctactaacactgtttt |
74 |
Q |
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||||||||||||||||||||||| ||||| |||||||||| ||||| ||||| |
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| T |
39986990 |
atcggtgatgctgctaagaatcaagttgccatgaaccctatcaacaccgtttt |
39986938 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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