View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21210_low_25 (Length: 260)
Name: NF21210_low_25
Description: NF21210
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21210_low_25 |
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Alignment Details
Target: chr1 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 11 - 253
Target Start/End: Complemental strand, 12097070 - 12096828
Alignment:
| Q |
11 |
ttattctttctgatagagaaaataacaaagagatttggcaaagctttgaagatccaactgatacatatcttccaggtatggaagtttcggcgagtggtgg |
110 |
Q |
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| T |
12097070 |
ttattctttctgatagagaaaataacaaagagatttggcaaagctttgaagatccaactgatacatatcttccaggtatgaaagtttcggcgagtggtgg |
12096971 |
T |
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| Q |
111 |
aagtggaattgggaaggatgctactttttgttcatggaaatcagaggaagatccttcatttggaaactatacaatgagtgttgattctgaagcatcacca |
210 |
Q |
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| T |
12096970 |
aagtggaattgggaaggatgctactttttgttcatggaaatcagaggaagatccttcatttggaaactatacaatgagtgttgattctgaagcatcacca |
12096871 |
T |
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| Q |
211 |
catatagtgattatggaaggagagaaaagaaggtggagaagtg |
253 |
Q |
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| T |
12096870 |
catatagtgattatggaaggagagaaaagaaggtggagaagtg |
12096828 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 183; Significance: 4e-99; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 11 - 253
Target Start/End: Original strand, 36288504 - 36288746
Alignment:
| Q |
11 |
ttattctttctgatagagaaaataacaaagagatttggcaaagctttgaagatccaactgatacatatcttccaggtatggaagtttcggcgagtggtgg |
110 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||| | ||| ||| ||||| |
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| T |
36288504 |
ttattctttcagatagagaaaataacaaagagatttggcaaagttttgaagatccaactgatacatatcttccaggtatgaaagctccggtgagcggtgg |
36288603 |
T |
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| Q |
111 |
aagtggaattgggaaggatgctactttttgttcatggaaatcagaggaagatccttcatttggaaactatacaatgagtgttgattctgaagcatcacca |
210 |
Q |
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|| |||||||||||||||||| |||||||||||||||||||||||| | ||||||||||| ||||||||||||||||||||||||||||||||||| || |
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| T |
36288604 |
aaatggaattgggaaggatgcaactttttgttcatggaaatcagagaatgatccttcattaggaaactatacaatgagtgttgattctgaagcatcgccg |
36288703 |
T |
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| Q |
211 |
catatagtgattatggaaggagagaaaagaaggtggagaagtg |
253 |
Q |
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| T |
36288704 |
cagatagtgattatggaaggagagaaaagaaggtggagaagtg |
36288746 |
T |
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