View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21210_low_27 (Length: 255)
Name: NF21210_low_27
Description: NF21210
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21210_low_27 |
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| [»] scaffold0041 (1 HSPs) |
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| [»] scaffold0472 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 213; Significance: 1e-117; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 15 - 235
Target Start/End: Complemental strand, 10978141 - 10977921
Alignment:
| Q |
15 |
cataggtaataatagcatttaatttagatcaaattttcattgcataatagtatttaggtcattagagtcaatcgagtcaagtaaccaatttggaatcgac |
114 |
Q |
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| T |
10978141 |
cataggtaataatagcatttaatttagatcaaatttgcattgcataatagtatttaggtcattagagtcaatcgagtcaagtaaccaatttggaatcaac |
10978042 |
T |
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| Q |
115 |
accaacctaaacaatttaaaattgagcgctgctaaatccagcgacaattcttttcaagaaaattccacgaagtacaatattgctttaataaaacgtgctt |
214 |
Q |
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| T |
10978041 |
accaacctaaacaatttaaaattgagcgctgctaaatccagcgacaattcttttcaagaaaattccacgaagtacaatattgctttaataaaacgtgctt |
10977942 |
T |
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| Q |
215 |
aaaccgctcaatgaatgaaat |
235 |
Q |
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| T |
10977941 |
aaaccgctcaatgaatgaaat |
10977921 |
T |
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Target: chr4; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 138 - 226
Target Start/End: Complemental strand, 38937573 - 38937485
Alignment:
| Q |
138 |
gagcgctgctaaatccagcgacaattcttttcaagaaaattccacgaagtacaatattgctttaataaaacgtgcttaaaccgctcaat |
226 |
Q |
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| T |
38937573 |
gagcgccgctaaatccagccacaattcttttcccaaaaattccacgaagtgcaatattgctttaataaaacgtggctaaaccgctcaat |
38937485 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 144 - 226
Target Start/End: Original strand, 46551147 - 46551229
Alignment:
| Q |
144 |
tgctaaatccagcgacaattcttttcaagaaaattccacgaagtacaatattgctttaataaaacgtgcttaaaccgctcaat |
226 |
Q |
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| T |
46551147 |
tgctaaatccagcgacaatcattttcccaaaaattccacgaaccgcatttttgctttaagaaaacgtgcctaaactgctcaat |
46551229 |
T |
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Target: scaffold0041 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0041
Description:
Target: scaffold0041; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 138 - 226
Target Start/End: Original strand, 93605 - 93692
Alignment:
| Q |
138 |
gagcgctgctaaatccagcgacaattcttttcaagaaaattccacgaagtacaatattgctttaataaaacgtgcttaaaccgctcaat |
226 |
Q |
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| T |
93605 |
gagcgctgctaaatccagcgacaattcttttcccgaaaattccacgaagtgc-attttgccttaataaaacgtggctaaaccgctcaat |
93692 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 138 - 226
Target Start/End: Complemental strand, 40872677 - 40872590
Alignment:
| Q |
138 |
gagcgctgctaaatccagcgacaattcttttcaagaaaattccacgaagtacaatattgctttaataaaacgtgcttaaaccgctcaat |
226 |
Q |
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| T |
40872677 |
gagcgctgctaaatccagcgacaattcttttcccgaaaattccacgaagtgc-attttgccttaataaaacgtggctaaaccgctcaat |
40872590 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0472 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0472
Description:
Target: scaffold0472; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 138 - 226
Target Start/End: Complemental strand, 8792 - 8705
Alignment:
| Q |
138 |
gagcgctgctaaatccagcgacaattcttttcaagaaaattccacgaagtacaatattgctttaataaaacgtgcttaaaccgctcaat |
226 |
Q |
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|||| |||||| ||||||||||||| |||||| ||||||||| ||||| || | || || |||||||||||| ||||||||||||| |
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| T |
8792 |
gagcactgctagatccagcgacaat-cttttctcaaaaattccatgaagtgcatttttactataataaaacgtggctaaaccgctcaat |
8705 |
T |
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