View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21210_low_28 (Length: 252)
Name: NF21210_low_28
Description: NF21210
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21210_low_28 |
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| [»] chr4 (4 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 239; Significance: 1e-132; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 10 - 252
Target Start/End: Original strand, 130281 - 130523
Alignment:
| Q |
10 |
aagaatatgtgaatgacgaattcaaaagaagctttcttcatctccgtaaggaactcaacagggtgtttcatgctagacaattcttctagcttgttgatca |
109 |
Q |
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| T |
130281 |
aagaaaatgtgaatgacgaattcaaaagaagctttcttcatctccgtaaggaactcaacagggtgtttcatgctagacaattcttctagcttgttgatca |
130380 |
T |
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| Q |
110 |
caatatcctcaatacgctctaagtacatttctaatacattgtgaccattgataggagatgatactagttgtttaaaacgtccgcgttctttatgtagaat |
209 |
Q |
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| T |
130381 |
caatatcctcaatacgctctaagtacatttctaatacattgtgaccattgataggagatgatactagttgtttaaaacgtccgcgttctttatgtagaat |
130480 |
T |
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| Q |
210 |
cttactatcgcctaattcaagggcggattttggataaccaatc |
252 |
Q |
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| T |
130481 |
cttactatcgcctaattcaagggcggattttggataaccaatc |
130523 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 10 - 191
Target Start/End: Original strand, 150114 - 150295
Alignment:
| Q |
10 |
aagaatatgtgaatgacgaattcaaaagaagctttcttcatctccgtaaggaactcaacagggtgtttcatgctagacaattcttctagcttgttgatca |
109 |
Q |
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| T |
150114 |
aagaaaatgtgaatgacgaattcaaaagaagcttttctcatctccataaggaactcaacagggtgtttcatgctagacaattcttctagcttgttgatca |
150213 |
T |
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| Q |
110 |
caatatcctcaatacgctctaagtacatttctaatacattgtgaccattgataggagatgatactagttgtttaaaacgtcc |
191 |
Q |
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| T |
150214 |
caatatcctcaatacgctctaagtacatttctaatacattccgaccaatgataggagccgcgactagtcgtttaaaacgtcc |
150295 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 10 - 149
Target Start/End: Complemental strand, 10304485 - 10304346
Alignment:
| Q |
10 |
aagaatatgtgaatgacgaattcaaaagaagctttcttcatctccgtaaggaactcaacagggtgtttcatgctagacaattcttctagcttgttgatca |
109 |
Q |
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| T |
10304485 |
aagaaaatgtgaatgatgaatttaaaagaagcttttctcatctccacgaggaactcaacagggtgtttcatactggataattcttctaacttgttgatca |
10304386 |
T |
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| Q |
110 |
caatatcctcaatacgctctaagtacatttctaatacatt |
149 |
Q |
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| T |
10304385 |
caatatcttcaatacgttctaagtattttactaatacatt |
10304346 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 58 - 116
Target Start/End: Complemental strand, 892474 - 892416
Alignment:
| Q |
58 |
aggaactcaacagggtgtttcatgctagacaattcttctagcttgttgatcacaatatc |
116 |
Q |
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| T |
892474 |
aggaactcaagagggtgttccatgatggataattcttctagcttgttgatcacaatatc |
892416 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 42 - 151
Target Start/End: Original strand, 3959369 - 3959478
Alignment:
| Q |
42 |
tttcttcatctccgtaaggaactcaacagggtgtttcatgctagacaattcttctagcttgttgatcacaatatcctcaatacgctctaagtacatttct |
141 |
Q |
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|||| ||||||| |||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||| | |
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| T |
3959369 |
tttcctcatctctttaagaaactcaacagggtgtttcatgctagacaattcttcaagcttgttgatcacaatatcctcaatacgctctagatacattgtt |
3959468 |
T |
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| Q |
142 |
aatacattgt |
151 |
Q |
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| T |
3959469 |
gatacattgt |
3959478 |
T |
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