View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21210_low_29 (Length: 250)
Name: NF21210_low_29
Description: NF21210
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21210_low_29 |
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Alignment Details
Target: chr3 (Bit Score: 159; Significance: 9e-85; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 159; E-Value: 9e-85
Query Start/End: Original strand, 14 - 226
Target Start/End: Original strand, 2111912 - 2112124
Alignment:
| Q |
14 |
agaccttcatatgaattaaattacactttctaagttttgataggattcagattataaaatatgaagnnnnnnnnnnctaattatataacccgaacaagga |
113 |
Q |
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| T |
2111912 |
agaccttcatatgaattaaattacgctttctaagttttgacaggattcaaattataaaatatgaagaaaaaaaaaactaattatataacccgaacaagga |
2112011 |
T |
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| Q |
114 |
caaaatagaaatttcagaggatatgcgagaagcccgaaggtgggaaaagaaaattataatttctttttccaccctaccaactacccacgccccctccaaa |
213 |
Q |
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|||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
2112012 |
caaaatagaaatttcagagggtatgtgagaagcccgaaggtgggaaaagaaaattataatttctttttccaccctaccaactaaccacgccccctccaaa |
2112111 |
T |
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| Q |
214 |
attcccaaaatac |
226 |
Q |
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||||||||||||| |
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| T |
2112112 |
attcccaaaatac |
2112124 |
T |
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