View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21210_low_3 (Length: 501)
Name: NF21210_low_3
Description: NF21210
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21210_low_3 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 227; Significance: 1e-125; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 75 - 322
Target Start/End: Complemental strand, 41342696 - 41342449
Alignment:
| Q |
75 |
ccattcctatagtacattacaaccacaaatgcgtgtttgttcttttttaatttcatattaattgcgtcaannnnnnnctgaaataataatgtttacaata |
174 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
41342696 |
ccattcctatagtacattacaaccacaaatgcgtgtttgttcttttttaatttcatattaattgcgtcaatttttttctgaaataataatgtttacaata |
41342597 |
T |
|
| Q |
175 |
aagatcatgtggtgtttaatttaatttgatattaatacaaataaatggcagatgcgtgcagcagtatctgaagttgctacttattttccaacagcaataa |
274 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41342596 |
aagatcatgtggtgtttaatttaatttgatattaatacaaataaatggcagatgcgtgcagcagtatctgaagttgctacttattttccaacagcaataa |
41342497 |
T |
|
| Q |
275 |
tcagtggaagaagccgagagaaggtgagttataaagcttacttaattt |
322 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41342496 |
tcagtggaagaagccgagagaaggtgagttataaagcttacttaattt |
41342449 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 133; E-Value: 6e-69
Query Start/End: Original strand, 359 - 495
Target Start/End: Complemental strand, 41342404 - 41342268
Alignment:
| Q |
359 |
tctcattatataactttttggtttaggtaaaagattttgtgaagttaaataatttatattatgctgggagtcatggtatggacataatggcaccatcagg |
458 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41342404 |
tctcattatataactttttggtttaggtaaaagattttgtgaagttaaataatttatattatgctgggagtcatggtatggacataatggcaccatcagg |
41342305 |
T |
|
| Q |
459 |
accaattagatcttctgacggcaaccacctatgctac |
495 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
41342304 |
accaattagatcttctgacggcaaccaccaatgctac |
41342268 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 189 - 227
Target Start/End: Original strand, 18219860 - 18219898
Alignment:
| Q |
189 |
tttaatttaatttgatattaatacaaataaatggcagat |
227 |
Q |
| |
|
||||||||||||||||||||| | ||||||||||||||| |
|
|
| T |
18219860 |
tttaatttaatttgatattaacataaataaatggcagat |
18219898 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University