View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21210_low_31 (Length: 242)

Name: NF21210_low_31
Description: NF21210
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21210_low_31
NF21210_low_31
[»] scaffold0015 (1 HSPs)
scaffold0015 (18-235)||(40610-40825)
[»] chr1 (15 HSPs)
chr1 (22-192)||(24233643-24233807)
chr1 (155-209)||(23896521-23896575)
chr1 (155-205)||(24243241-24243291)
chr1 (155-209)||(24246879-24246933)
chr1 (65-135)||(24805342-24805412)
chr1 (79-133)||(45693180-45693234)
chr1 (167-216)||(24512674-24512723)
chr1 (160-213)||(24635180-24635233)
chr1 (161-211)||(24222354-24222404)
chr1 (65-135)||(24627055-24627125)
chr1 (155-209)||(24805447-24805501)
chr1 (155-213)||(25611365-25611423)
chr1 (70-135)||(23896421-23896486)
chr1 (79-131)||(25611292-25611344)
chr1 (155-213)||(25478220-25478278)
[»] chr7 (1 HSPs)
chr7 (18-229)||(1421404-1421611)
[»] chr6 (3 HSPs)
chr6 (67-132)||(176000-176065)
chr6 (66-135)||(1471212-1471281)
chr6 (66-135)||(7565040-7565109)
[»] chr5 (1 HSPs)
chr5 (162-209)||(3181351-3181398)
[»] chr4 (1 HSPs)
chr4 (168-212)||(11032514-11032558)
[»] chr2 (1 HSPs)
chr2 (68-132)||(11237395-11237459)


Alignment Details
Target: scaffold0015 (Bit Score: 183; Significance: 4e-99; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 18 - 235
Target Start/End: Original strand, 40610 - 40825
Alignment:
Q  18 attaactgtgcgactcacaaatactccatgttgatcacaacgaaacttagaagggaaatctttaatccttctccaagagttggtgcccaaagtatgaact 117  Q
    ||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||    
T  40610 attaactgtgccactcacaaatactccatgtcgatcacaacgaaacttagaagggaagtcttcaatccttctccaagagttggtgcccaaagtatgaact 40709  T
Q  118 ttaacttgagttttgcaagcaacattgtatttacggccataacaaaaaacagaaacaaccttgtaattatcaatgaaaggatcatagccaaatgcaaata 217  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||  ||||||||||||||||||||||||||||||||    
T  40710 ttaacttgagttttgcaagcaacattgtatttacgaccataacaaaaaatagaaacaaccttgtaa--atcaatgaaaggatcatagccaaatgcaaata 40807  T
Q  218 gatttgaaccttcttctc 235  Q
    ||||||||||||||||||    
T  40808 gatttgaaccttcttctc 40825  T

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Target: chr1 (Bit Score: 76; Significance: 3e-35; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 22 - 192
Target Start/End: Original strand, 24233643 - 24233807
Alignment:
Q  22 actgtgcgactcacaaatactccatgttgatcacaacgaaacttagaagggaaatctttaatccttctccaagagttggtgcccaaagtatgaactttaa 121  Q
    ||||||| || ||||| |||||||||| || || |||||||| |||||||||| || ||||||||||||||||||| ||| || || |||||||||||||    
T  24233643 actgtgccacacacaactactccatgtcgaccaaaacgaaacatagaagggaagtccttaatccttctccaagagtcggtacctaatgtatgaactttaa 24233742  T
Q  122 cttgagttttgcaagcaacattgtatttacggccataacaaaaaacagaaacaaccttgtaattatcaatg 192  Q
    ||||||||||||||||||      || || | ||||||||||||||||||| |||||||||||||| ||||    
T  24233743 cttgagttttgcaagcaa------atctatgaccataacaaaaaacagaaataaccttgtaattattaatg 24233807  T

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Target: chr1; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 155 - 209
Target Start/End: Original strand, 23896521 - 23896575
Alignment:
Q  155 cataacaaaaaacagaaacaaccttgtaattatcaatgaaaggatcatagccaaa 209  Q
    |||| |||||||||||||||||||||||||||| |||||||||||||||||||||    
T  23896521 catagcaaaaaacagaaacaaccttgtaattatgaatgaaaggatcatagccaaa 23896575  T

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Target: chr1; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 155 - 205
Target Start/End: Original strand, 24243241 - 24243291
Alignment:
Q  155 cataacaaaaaacagaaacaaccttgtaattatcaatgaaaggatcatagc 205  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  24243241 cataacaaaaaacagaaacaaccttgtaattatcaatgaaagggtcatagc 24243291  T

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Target: chr1; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 155 - 209
Target Start/End: Original strand, 24246879 - 24246933
Alignment:
Q  155 cataacaaaaaacagaaacaaccttgtaattatcaatgaaaggatcatagccaaa 209  Q
    |||| |||||||||||||||| |||||||||||||||||||||||||||||||||    
T  24246879 catagcaaaaaacagaaacaatcttgtaattatcaatgaaaggatcatagccaaa 24246933  T

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Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 65 - 135
Target Start/End: Original strand, 24805342 - 24805412
Alignment:
Q  65 tagaagggaaatctttaatccttctccaagagttggtgcccaaagtatgaactttaacttgagttttgcaa 135  Q
    ||||||||||||||| |||||||||||| || |  ||||||||||| ||||||||||||| ||||||||||    
T  24805342 tagaagggaaatcttgaatccttctccatgaatgagtgcccaaagtgtgaactttaacttcagttttgcaa 24805412  T

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Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 79 - 133
Target Start/End: Original strand, 45693180 - 45693234
Alignment:
Q  79 ttaatccttctccaagagttggtgcccaaagtatgaactttaacttgagttttgc 133  Q
    |||||||| ||||||||||  ||||||||||||||||||||||||||||||||||    
T  45693180 ttaatcctactccaagagtctgtgcccaaagtatgaactttaacttgagttttgc 45693234  T

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Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 167 - 216
Target Start/End: Complemental strand, 24512723 - 24512674
Alignment:
Q  167 cagaaacaaccttgtaattatcaatgaaaggatcatagccaaatgcaaat 216  Q
    |||||||||||||||| ||||||||||||||||| |||||||||||||||    
T  24512723 cagaaacaaccttgtagttatcaatgaaaggatcgtagccaaatgcaaat 24512674  T

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Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 160 - 213
Target Start/End: Original strand, 24635180 - 24635233
Alignment:
Q  160 caaaaaacagaaacaaccttgtaattatcaatgaaaggatcatagccaaatgca 213  Q
    ||||||||||||||||||||||| ||||||||||||| ||  ||||||||||||    
T  24635180 caaaaaacagaaacaaccttgtagttatcaatgaaagtattgtagccaaatgca 24635233  T

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Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 161 - 211
Target Start/End: Original strand, 24222354 - 24222404
Alignment:
Q  161 aaaaaacagaaacaaccttgtaattatcaatgaaaggatcatagccaaatg 211  Q
    |||||||||||||||||||||||||||| |||||| |||| || |||||||    
T  24222354 aaaaaacagaaacaaccttgtaattatcgatgaaacgatcgtaaccaaatg 24222404  T

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Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 65 - 135
Target Start/End: Original strand, 24627055 - 24627125
Alignment:
Q  65 tagaagggaaatctttaatccttctccaagagttggtgcccaaagtatgaactttaacttgagttttgcaa 135  Q
    ||||||||||||| ||| |||||||||| || |  ||||||||||||| ||  ||||||||||||||||||    
T  24627055 tagaagggaaatccttagtccttctccatgaatgtgtgcccaaagtataaatgttaacttgagttttgcaa 24627125  T

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Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 155 - 209
Target Start/End: Original strand, 24805447 - 24805501
Alignment:
Q  155 cataacaaaaaacagaaacaaccttgtaattatcaatgaaaggatcatagccaaa 209  Q
    |||| ||||||||||||| ||| |||||||||| ||| |||||||||||||||||    
T  24805447 catagcaaaaaacagaaaaaactttgtaattatgaataaaaggatcatagccaaa 24805501  T

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Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 155 - 213
Target Start/End: Original strand, 25611365 - 25611423
Alignment:
Q  155 cataacaaaaaacagaaacaaccttgtaattatcaatgaaaggatcatagccaaatgca 213  Q
    |||||||||||||||  ||||| ||||||||||||| | ||||||| ||||||||||||    
T  25611365 cataacaaaaaacagccacaactttgtaattatcaacggaaggatcgtagccaaatgca 25611423  T

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Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 70 - 135
Target Start/End: Original strand, 23896421 - 23896486
Alignment:
Q  70 gggaaatctttaatccttctccaagagttggtgcccaaagtatgaactttaacttgagttttgcaa 135  Q
    |||||||| |||||||||||||| || |  ||||||||| | |||||||| |||||||||||||||    
T  23896421 gggaaatccttaatccttctccatgaatgtgtgcccaaaatgtgaactttcacttgagttttgcaa 23896486  T

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Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 79 - 131
Target Start/End: Original strand, 25611292 - 25611344
Alignment:
Q  79 ttaatccttctccaagagttggtgcccaaagtatgaactttaacttgagtttt 131  Q
    ||||||||| ||||| | | |||||||||||||||||||| ||||||||||||    
T  25611292 ttaatccttttccaaaactcggtgcccaaagtatgaacttgaacttgagtttt 25611344  T

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Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 213
Target Start/End: Complemental strand, 25478278 - 25478220
Alignment:
Q  155 cataacaaaaaacagaaacaaccttgtaattatcaatgaaaggatcatagccaaatgca 213  Q
    |||||||||||||||||||| ||||||||  ||  || ||||||||||| |||||||||    
T  25478278 cataacaaaaaacagaaacagccttgtaacgatggataaaaggatcataaccaaatgca 25478220  T

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Target: chr7 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 18 - 229
Target Start/End: Original strand, 1421404 - 1421611
Alignment:
Q  18 attaactgtgcgactcacaaatactccatgttgatcacaacgaaacttagaagggaaatctttaatccttctccaagagttggtgcccaaagtatgaact 117  Q
    |||||| |||| ||| || |||| ||||||| | ||  ||||||  ||||||||||| || |||||||||||||||||||||||| ||||||||||||||    
T  1421404 attaaccgtgccacttacgaatattccatgtcgttccaaacgaacattagaagggaagtccttaatccttctccaagagttggtg-ccaaagtatgaact 1421502  T
Q  118 ttaacttgagttttgcaagcaacattgtatttacggccataacaaaaaacagaaacaaccttgtaattatcaatgaaaggatcatagccaaatgcaaata 217  Q
    | ||||||||||||| |||   |  |||  | |   ||||| |||||||||| ||||||||||||||||||||||||||||||||| ||||| ||| |||    
T  1421503 tcaacttgagttttgtaag---ccctgtgataagaaccataccaaaaaacagcaacaaccttgtaattatcaatgaaaggatcatatccaaaagcatata 1421599  T
Q  218 gatttgaacctt 229  Q
     | |||||||||    
T  1421600 cagttgaacctt 1421611  T

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Target: chr6 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 67 - 132
Target Start/End: Complemental strand, 176065 - 176000
Alignment:
Q  67 gaagggaaatctttaatccttctccaagagttggtgcccaaagtatgaactttaacttgagttttg 132  Q
    |||||||| |||  |||||||||||||||||||||||| ||||| ||||| |||||||||||||||    
T  176065 gaagggaagtctggaatccttctccaagagttggtgcctaaagtgtgaaccttaacttgagttttg 176000  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 66 - 135
Target Start/End: Original strand, 1471212 - 1471281
Alignment:
Q  66 agaagggaaatctttaatccttctccaagagttggtgcccaaagtatgaactttaacttgagttttgcaa 135  Q
    ||||||||| |||| |||| |||||||| | ||| | || ||||||||||| |||||| |||||||||||    
T  1471212 agaagggaagtcttgaatcgttctccaaaaattgttacctaaagtatgaaccttaactagagttttgcaa 1471281  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 66 - 135
Target Start/End: Original strand, 7565040 - 7565109
Alignment:
Q  66 agaagggaaatctttaatccttctccaagagttggtgcccaaagtatgaactttaacttgagttttgcaa 135  Q
    ||||||||| |||  |||||||||||||   ||| | || ||||||||||| ||||||||||||||||||    
T  7565040 agaagggaagtctggaatccttctccaaacattgctacctaaagtatgaaccttaacttgagttttgcaa 7565109  T

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Target: chr5 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 162 - 209
Target Start/End: Complemental strand, 3181398 - 3181351
Alignment:
Q  162 aaaaacagaaacaaccttgtaattatcaatgaaaggatcatagccaaa 209  Q
    |||||||||||||||||| ||||||||||||||||||||||| |||||    
T  3181398 aaaaacagaaacaaccttataattatcaatgaaaggatcataaccaaa 3181351  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 168 - 212
Target Start/End: Complemental strand, 11032558 - 11032514
Alignment:
Q  168 agaaacaaccttgtaattatcaatgaaaggatcatagccaaatgc 212  Q
    |||||||||||||||  |||| || ||||||||||||||||||||    
T  11032558 agaaacaaccttgtacgtatcgataaaaggatcatagccaaatgc 11032514  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 68 - 132
Target Start/End: Complemental strand, 11237459 - 11237395
Alignment:
Q  68 aagggaaatctttaatccttctccaagagttggtgcccaaagtatgaactttaacttgagttttg 132  Q
    |||| ||||| | ||||||||||||| | ||||| ||||||||||| || || ||||||||||||    
T  11237459 aaggtaaatcatgaatccttctccaaaaattggtacccaaagtatggaccttcacttgagttttg 11237395  T

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