View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21210_low_33 (Length: 238)
Name: NF21210_low_33
Description: NF21210
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21210_low_33 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 50102886 - 50102666
Alignment:
| Q |
1 |
tcaactaggtaccctttagatggtacaagtggattcttcccctcagcaacctaaagcaaatagccagccaacaaaacaaagcaataaatgttatcagcaa |
100 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
50102886 |
tcaactcggtaccctttagatggtacaagtggattcttcccctcagcaacctaaagcaaatagccagccaacaaaacaaagcaataaatggtatcagcaa |
50102787 |
T |
|
| Q |
101 |
cgggaagaaaaaatataaaaacaaacttaagcaatctattgatgactcacccatggccaccaagtagtcagtttcttagagagagcggtcacccatttat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50102786 |
cgggaagaaaaaatataaaaacaaacttaagcaatctattgatgactcacccatggccaccaagtagtcagtttcttagagagagcggtcacccatttat |
50102687 |
T |
|
| Q |
201 |
cagaaccgtgcagtgctttac |
221 |
Q |
| |
|
||||| ||||||||||||||| |
|
|
| T |
50102686 |
cagaatcgtgcagtgctttac |
50102666 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University