View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21210_low_35 (Length: 227)
Name: NF21210_low_35
Description: NF21210
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21210_low_35 |
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Alignment Details
Target: chr8 (Bit Score: 76; Significance: 3e-35; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 15 - 90
Target Start/End: Complemental strand, 8184536 - 8184461
Alignment:
| Q |
15 |
atgaagaagagatttggcagcattaatgttagacatggtgaagaaaaccattgtaaaaagtacaaaacaaagagtg |
90 |
Q |
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| T |
8184536 |
atgaagaagagatttggcagcattaatgttagacatggtgaagaaaaccattgtaaaaagtacaaaacaaagagtg |
8184461 |
T |
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Target: chr8; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 136 - 190
Target Start/End: Complemental strand, 8184360 - 8184306
Alignment:
| Q |
136 |
cccagattatggcatatctcaagttttattgagtatttaatttggccatggccac |
190 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||| |||||| |
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| T |
8184360 |
cccagattatggcatatctcaaattttattgagtatttaatttggccacggccac |
8184306 |
T |
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