View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21210_low_36 (Length: 227)
Name: NF21210_low_36
Description: NF21210
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21210_low_36 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 186; Significance: 1e-101; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 28571827 - 28572067
Alignment:
| Q |
1 |
ttagaagttacttagttacatcaattataaacttattttttgtcctctaattgaaatgaattcttatacactaaaaataacatctacttacatgatgcac |
100 |
Q |
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| T |
28571827 |
ttagaagttacttagttacatcaattataaacttattttttgtcctctaattgaaatgaattcttatacactaaaaataatatgtacttacatgatgcac |
28571926 |
T |
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| Q |
101 |
ttaattagttaaaaattatttaattgatgcac--------------aaatattacagtgttggtaatcaatggattcacattgacaccacaattattttc |
186 |
Q |
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| T |
28571927 |
ttaattagttaaaaattatttaattgatgcacttcgttaatataaaaaatattacagtgttggtaatcaatggattcacattgacaccacaattattttc |
28572026 |
T |
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| Q |
187 |
acttttcaaaatattataatactccctccgtccctaattat |
227 |
Q |
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| T |
28572027 |
acttttcaaaatattataatactccctccgtccctaattat |
28572067 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 28579420 - 28579660
Alignment:
| Q |
1 |
ttagaagttacttagttacatcaattataaacttattttttgtcctctaattgaaatgaattcttatacactaaaaataacatctacttacatgatgcac |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||| |
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| T |
28579420 |
ttagaagttacttagttacatcaattataaacttattttttgtcctctaattgaaatgaattcttatacactaaaaataatatgtacttacatgatgcac |
28579519 |
T |
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| Q |
101 |
ttaattagttaaaaattatttaattgatgcac--------------aaatattacagtgttggtaatcaatggattcacattgacaccacaattattttc |
186 |
Q |
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| T |
28579520 |
ttaattagttaaaaattatttaattgatgcacttcgttaatataaaaaatattacagtgttggtaatcaatggattcacattgacaccacaattattttc |
28579619 |
T |
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| Q |
187 |
acttttcaaaatattataatactccctccgtccctaattat |
227 |
Q |
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| T |
28579620 |
acttttcaaaatattataatactccctccgtccctaattat |
28579660 |
T |
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