View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21210_low_37 (Length: 223)
Name: NF21210_low_37
Description: NF21210
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21210_low_37 |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 182; Significance: 1e-98; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 182; E-Value: 1e-98
Query Start/End: Original strand, 21 - 223
Target Start/End: Complemental strand, 11606038 - 11605836
Alignment:
| Q |
21 |
aagatgctatagatgaatacaatcttcgccttgtcgatcatcgacaagggaacaacaaaaattcttcttttcacaaggttgcttttgacatcaagaccat |
120 |
Q |
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| T |
11606038 |
aagatgctatagatgaatacaatcttcgccttgtcgatcatcgacaagggaacaacaaaaattcttcttttcacaaggttgcttttgacatcaagaccat |
11605939 |
T |
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| Q |
121 |
gaaacctagacacagaatagcttcagatattnnnnnnntcaaatccaaagttgaagctatcactcaaggacgtccaatgatatctggtgtaggttcaagc |
220 |
Q |
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| T |
11605938 |
gaaacctagacacagaatagcttcagatattaaaaaaatcaaatccaaagttgaagctatcactcaaggacgtccaatgatatctggtgtaggttcaagc |
11605839 |
T |
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| Q |
221 |
tca |
223 |
Q |
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||| |
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| T |
11605838 |
tca |
11605836 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 21 - 198
Target Start/End: Original strand, 11640026 - 11640200
Alignment:
| Q |
21 |
aagatgctatagatgaatacaatcttcgccttgtcgatcatcgacaagggaacaacaaaaattcttcttttcacaaggttgcttttgacatcaagaccat |
120 |
Q |
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| T |
11640026 |
aagatgctatagatgaatactatcttcgccttgtcgatcatcaacaaggcaaaatcaaa---tcttcttatcacaagattgtttttggaattaagaccat |
11640122 |
T |
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| Q |
121 |
gaaacctagacacagaatagcttcagatattnnnnnnntcaaatccaaagttgaagctatcactcaaggacgtccaat |
198 |
Q |
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| T |
11640123 |
gaaagctagacgcaaaattgcttcaaatatacaaggaatcaaatccaaagttgaagttatctcgcacagacgtccaat |
11640200 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 21 - 150
Target Start/End: Original strand, 11621535 - 11621661
Alignment:
| Q |
21 |
aagatgctatagatgaatacaatcttcgccttgtcgatcatcgacaagggaacaacaaaaattcttcttttcacaaggttgcttttgacatcaagaccat |
120 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||| |||||| || | || | |||| |||||||||| || ||| | ||| |||||||| |
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| T |
11621535 |
aagatgctatagatgaatactatcttcgccttgtcgatcatcaacaaggaaaaatcaga---tcttattttcacaagattcttttcggcattaagaccat |
11621631 |
T |
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| Q |
121 |
gaaacctagacacagaatagcttcagatat |
150 |
Q |
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|||| ||||||||| |||||||||| |||| |
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| T |
11621632 |
gaaagctagacacaaaatagcttcaaatat |
11621661 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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