View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21210_low_4 (Length: 490)

Name: NF21210_low_4
Description: NF21210
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21210_low_4
NF21210_low_4
[»] chr7 (9 HSPs)
chr7 (349-490)||(21234584-21234731)
chr7 (213-356)||(21234256-21234400)
chr7 (8-91)||(21234098-21234181)
chr7 (122-198)||(21234190-21234268)
chr7 (36-101)||(6039306-6039371)
chr7 (25-98)||(14195760-14195833)
chr7 (13-109)||(6018358-6018454)
chr7 (30-109)||(3585523-3585602)
chr7 (44-101)||(5236875-5236932)
[»] chr5 (9 HSPs)
chr5 (25-108)||(18832234-18832317)
chr5 (13-101)||(23214834-23214922)
chr5 (62-101)||(20680628-20680667)
chr5 (30-109)||(26069266-26069345)
chr5 (13-99)||(17469569-17469655)
chr5 (44-90)||(24162031-24162077)
chr5 (26-100)||(29799057-29799131)
chr5 (44-101)||(29987988-29988045)
chr5 (13-65)||(24513231-24513283)
[»] chr4 (3 HSPs)
chr4 (13-101)||(18750824-18750912)
chr4 (30-109)||(9263351-9263430)
chr4 (25-109)||(23083712-23083796)
[»] chr6 (4 HSPs)
chr6 (30-100)||(17384040-17384110)
chr6 (16-101)||(22564558-22564643)
chr6 (13-109)||(9519732-9519828)
chr6 (30-90)||(14641649-14641709)
[»] scaffold0024 (1 HSPs)
scaffold0024 (13-90)||(41339-41416)
[»] chr8 (4 HSPs)
chr8 (68-109)||(30487896-30487937)
chr8 (13-90)||(13313291-13313368)
chr8 (13-90)||(30117678-30117755)
chr8 (13-101)||(24380362-24380450)
[»] chr2 (3 HSPs)
chr2 (30-103)||(23010050-23010123)
chr2 (25-101)||(17891743-17891819)
chr2 (25-99)||(35680111-35680185)
[»] chr1 (4 HSPs)
chr1 (30-103)||(24901226-24901299)
chr1 (13-101)||(22626163-22626251)
chr1 (58-100)||(26581618-26581660)
chr1 (25-98)||(21848638-21848711)
[»] scaffold0019 (1 HSPs)
scaffold0019 (30-98)||(35195-35263)
[»] chr3 (6 HSPs)
chr3 (32-98)||(19387871-19387937)
chr3 (13-90)||(3114729-3114806)
chr3 (32-101)||(22470411-22470480)
chr3 (30-90)||(8765691-8765751)
chr3 (30-90)||(8770581-8770641)
chr3 (13-89)||(18457132-18457208)
[»] scaffold0014 (1 HSPs)
scaffold0014 (44-101)||(192153-192210)


Alignment Details
Target: chr7 (Bit Score: 100; Significance: 3e-49; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 349 - 490
Target Start/End: Original strand, 21234584 - 21234731
Alignment:
Q  349 tatctaataaagggcaaaatacaagggaaaatatat--gagatcgaagtaagtataataatcatttaata----caccacacaaaagcaataatatattc 442  Q
    ||||||||||||||||||||||||||||||||||||  |||||||||||||||||| |||||| ||||||    || ||||||||||||||||||||| |    
T  21234584 tatctaataaagggcaaaatacaagggaaaatatatatgagatcgaagtaagtatactaatcaattaataaatacatcacacaaaagcaataatatatcc 21234683  T
Q  443 tcgagtcaatcatatgatacatcttcaataaattgtctctcaagtcat 490  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||    
T  21234684 tcgagtcaatcatatgatacaccttcaataaattgtctctcaagtcat 21234731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 213 - 356
Target Start/End: Original strand, 21234256 - 21234400
Alignment:
Q  213 aaataaatgatttcaaaacatagattgatcataatcaa-aaaatcatccacatcactgacaatgatacgtctat----ggttagttgtaaaaggaatgaa 307  Q
    |||||||||||||||||| ||||||    ||| ||| | ||||| ||| |||||| ||||||||| ||||||||    |||||||||||||| |||||||    
T  21234256 aaataaatgatttcaaaagatagat----catcatcgagaaaattatctacatcagtgacaatgacacgtctatatatggttagttgtaaaatgaatgaa 21234351  T
Q  308 aggaagtactccatctattgtcaccgactcttcctcgacaatatctaat 356  Q
    | ||||||||||||||||||||||||||| |||||||||||||||||||    
T  21234352 atgaagtactccatctattgtcaccgactattcctcgacaatatctaat 21234400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 8 - 91
Target Start/End: Original strand, 21234098 - 21234181
Alignment:
Q  8 agaagcataggcaaattctcttatactcctctgttatgctgataaaatctattgaaaataactgaataacatgctaaaaataat 91  Q
    |||| ||||| |||||||||| ||||||||||||||||||| ||||| ||||| ||||| ||||||||||||||||||||||||    
T  21234098 agaatcatagacaaattctctaatactcctctgttatgctggtaaaacctattaaaaatgactgaataacatgctaaaaataat 21234181  T

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Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 122 - 198
Target Start/End: Original strand, 21234190 - 21234268
Alignment:
Q  122 caaagtacatagtgcagtacacatgaaaccaattaccaattaaa-tagtcatacatctaaagaatc--aataaatgattt 198  Q
    |||||||||| ||||| ||||||||||||||| | ||||||||| |||||||||||||||||||||  ||||||||||||    
T  21234190 caaagtacatggtgcactacacatgaaaccaaat-ccaattaaattagtcatacatctaaagaatcaaaataaatgattt 21234268  T

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Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 36 - 101
Target Start/End: Complemental strand, 6039371 - 6039306
Alignment:
Q  36 ctctgttatgctgataaaatctattgaaaataactgaataacatgctaaaaataatataagatgac 101  Q
    ||||||||||||| ||||||||| ||||||| |||||| |||||| ||| |||||| |||||||||    
T  6039371 ctctgttatgctggtaaaatctactgaaaatgactgaaaaacatgttaagaataatgtaagatgac 6039306  T

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Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 25 - 98
Target Start/End: Original strand, 14195760 - 14195833
Alignment:
Q  25 ctcttatactcctctgttatgctgataaaatctattgaaaataactgaataacatgctaaaaataatataagat 98  Q
    |||| ||||||||||||| ||||| ||||| ||| | ||||| |||||| |||||||||| ||||| |||||||    
T  14195760 ctctaatactcctctgttttgctggtaaaacctactaaaaatgactgaaaaacatgctaagaataacataagat 14195833  T

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Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 13 - 109
Target Start/End: Original strand, 6018358 - 6018454
Alignment:
Q  13 cataggcaaattctcttatactcctctgttatgctgataaaatctattgaaaataactgaataacatgctaaaaataatataagatgacttatcatc 109  Q
    ||||||||| |  ||| ||||||||||||| || || ||||| ||| | |||   |||||| |||||||||||||||| |||||||||| |||||||    
T  6018358 cataggcaattaatctaatactcctctgttttgttggtaaaacctactaaaatcgactgaaaaacatgctaaaaataacataagatgacatatcatc 6018454  T

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Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 30 - 109
Target Start/End: Complemental strand, 3585602 - 3585523
Alignment:
Q  30 atactcctctgttatgctgataaaatctattgaaaataactgaataacatgctaaaaataatataagatgacttatcatc 109  Q
    |||||||||  || ||||| ||||| ||| ||||||| | |||| |||||||||| |||||| ||||||||||| |||||    
T  3585602 atactcctccattttgctgctaaaacctactgaaaatgattgaaaaacatgctaagaataatgtaagatgacttgtcatc 3585523  T

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Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 44 - 101
Target Start/End: Complemental strand, 5236932 - 5236875
Alignment:
Q  44 tgctgataaaatctattgaaaataactgaataacatgctaaaaataatataagatgac 101  Q
    ||||| ||||| ||| |||||||||||||| |||||||||| |||||  |||||||||    
T  5236932 tgctgctaaaacctactgaaaataactgaaaaacatgctaagaataacgtaagatgac 5236875  T

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Target: chr5 (Bit Score: 44; Significance: 8e-16; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 25 - 108
Target Start/End: Original strand, 18832234 - 18832317
Alignment:
Q  25 ctcttatactcctctgttatgctgataaaatctattgaaaataactgaataacatgctaaaaataatataagatgacttatcat 108  Q
    |||| ||||||||||||| || || ||||| ||||||||||  |||||| ||||||||||||||||| ||||||||| ||||||    
T  18832234 ctctaatactcctctgttttgttggtaaaacctattgaaaaagactgaaaaacatgctaaaaataatgtaagatgacctatcat 18832317  T

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Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 13 - 101
Target Start/End: Complemental strand, 23214922 - 23214834
Alignment:
Q  13 cataggcaaattctcttatactcctctgttatgctgataaaatctattgaaaataactgaataacatgctaaaaataatataagatgac 101  Q
    ||||||||| |||||| |||||||||  || || || |||| | ||||||||||||||||| |||||||||| |||||  |||||||||    
T  23214922 cataggcaatttctctcatactcctcctttttgttgctaaactgtattgaaaataactgaaaaacatgctaagaataacgtaagatgac 23214834  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 62 - 101
Target Start/End: Original strand, 20680628 - 20680667
Alignment:
Q  62 aaaataactgaataacatgctaaaaataatataagatgac 101  Q
    ||||||||| || |||||||||||||||||||||||||||    
T  20680628 aaaataactaaaaaacatgctaaaaataatataagatgac 20680667  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 30 - 109
Target Start/End: Original strand, 26069266 - 26069345
Alignment:
Q  30 atactcctctgttatgctgataaaatctattgaaaataactgaataacatgctaaaaataatataagatgacttatcatc 109  Q
    ||||||||||||| ||||| ||||||||| ||||||| ||| || |||||| ||| |||||  |||||| |||| |||||    
T  26069266 atactcctctgttctgctggtaaaatctactgaaaatgactaaaaaacatgttaagaataacgtaagataacttgtcatc 26069345  T

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Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 13 - 99
Target Start/End: Complemental strand, 17469655 - 17469569
Alignment:
Q  13 cataggcaaattctcttatactcctctgttatgctgataaaatctattgaaaataactgaataacatgctaaaaataatataagatg 99  Q
    ||||||||| | |||| ||||||||||||| ||||| ||||| ||  ||||||| | |||| |||||||||| |||||  |||||||    
T  17469655 cataggcaattgctctaatactcctctgttttgctggtaaaacctgctgaaaatgattgaaaaacatgctaagaataacgtaagatg 17469569  T

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Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 44 - 90
Target Start/End: Complemental strand, 24162077 - 24162031
Alignment:
Q  44 tgctgataaaatctattgaaaataactgaataacatgctaaaaataa 90  Q
    ||||| ||||||||||||||||| |||||| |||||||||| |||||    
T  24162077 tgctggtaaaatctattgaaaatgactgaaaaacatgctaagaataa 24162031  T

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Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 26 - 100
Target Start/End: Original strand, 29799057 - 29799131
Alignment:
Q  26 tcttatactcctctgttatgctgataaaatctattgaaaataactgaataacatgctaaaaataatataagatga 100  Q
    |||||||||||||| || ||||| || || ||||| ||||| ||| || ||||| |||| |||||||||||||||    
T  29799057 tcttatactcctctattttgctggtagaacctattaaaaatgactaaaaaacatactaagaataatataagatga 29799131  T

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Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 44 - 101
Target Start/End: Original strand, 29987988 - 29988045
Alignment:
Q  44 tgctgataaaatctattgaaaataactgaataacatgctaaaaataatataagatgac 101  Q
    ||||| ||||||||| | ||||| |||||| ||||||||||||||||  |||||||||    
T  29987988 tgctgctaaaatctactaaaaatgactgaaaaacatgctaaaaataacgtaagatgac 29988045  T

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Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 13 - 65
Target Start/End: Complemental strand, 24513283 - 24513231
Alignment:
Q  13 cataggcaaattctcttatactcctctgttatgctgataaaatctattgaaaa 65  Q
    |||||||||||||||| |||||||||| || ||||| | ||||||| ||||||    
T  24513283 cataggcaaattctctaatactcctcttttttgctgctgaaatctactgaaaa 24513231  T

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Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 13 - 101
Target Start/End: Original strand, 18750824 - 18750912
Alignment:
Q  13 cataggcaaattctcttatactcctctgttatgctgataaaatctattgaaaataactgaataacatgctaaaaataatataagatgac 101  Q
    ||||||||| | |||| |||||||||  || ||||| ||||  ||| |||||||||||||| || |||||||||||||| |||||||||    
T  18750824 cataggcaattgctctaatactcctcctttttgctgctaaaccctactgaaaataactgaaaaatatgctaaaaataatgtaagatgac 18750912  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 30 - 109
Target Start/End: Complemental strand, 9263430 - 9263351
Alignment:
Q  30 atactcctctgttatgctgataaaatctattgaaaataactgaataacatgctaaaaataatataagatgacttatcatc 109  Q
    ||||||||| ||| ||||||||||| ||||||||  | |||||| ||||||||||||||||  |||||| || |||||||    
T  9263430 atactcctcagttctgctgataaaacctattgaatttgactgaaaaacatgctaaaaataacgtaagataacctatcatc 9263351  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 25 - 109
Target Start/End: Original strand, 23083712 - 23083796
Alignment:
Q  25 ctcttatactcctctgttatgctgataaaatctattgaaaataactgaataacatgctaaaaataatataagatgacttatcatc 109  Q
    |||| |||||||||| || ||||  |||||  ||||||||||| ||||| ||||||||||  |||| |||||||| |||||||||    
T  23083712 ctctaatactcctctattctgcttttaaaacatattgaaaatagctgaaaaacatgctaagtataacataagatggcttatcatc 23083796  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 30 - 100
Target Start/End: Original strand, 17384040 - 17384110
Alignment:
Q  30 atactcctctgttatgctgataaaatctattgaaaataactgaataacatgctaaaaataatataagatga 100  Q
    |||||||||  || ||||| ||||| ||| |||||||||||||| |||||||||| |||||| ||||||||    
T  17384040 atactcctcctttttgctgctaaaacctaatgaaaataactgaaaaacatgctaagaataatgtaagatga 17384110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 16 - 101
Target Start/End: Complemental strand, 22564643 - 22564558
Alignment:
Q  16 aggcaaattctcttatactcctctgttatgctgataaaatctattgaaaataactgaataacatgctaaaaataatataagatgac 101  Q
    |||||| | |||| ||||||||||||| ||||| ||||| ||| | ||||| |||||| |||||||||| |||||  |||||||||    
T  22564643 aggcaattgctctaatactcctctgttttgctggtaaaacctactaaaaatgactgaaaaacatgctaagaataacgtaagatgac 22564558  T

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Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 13 - 109
Target Start/End: Original strand, 9519732 - 9519828
Alignment:
Q  13 cataggcaaattctcttatactcctctgttatgctgataaaatctattgaaaataactgaataacatgctaaaaataatataagatgacttatcatc 109  Q
    ||||||||| | |||| |||||||||  || ||||| ||||  ||| ||||||||||| || ||||||||||||||||  |||||||| || |||||    
T  9519732 cataggcaattgctctaatactcctcctttttgctgctaaatactactgaaaataactaaaaaacatgctaaaaataacgtaagatgaattgtcatc 9519828  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 30 - 90
Target Start/End: Original strand, 14641649 - 14641709
Alignment:
Q  30 atactcctctgttatgctgataaaatctattgaaaataactgaataacatgctaaaaataa 90  Q
    |||||||||  || ||||| ||||| ||| |||||||||||||| |||||||||| |||||    
T  14641649 atactcctcctttttgctgctaaaacctactgaaaataactgaaaaacatgctaagaataa 14641709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 13 - 90
Target Start/End: Original strand, 41339 - 41416
Alignment:
Q  13 cataggcaaattctcttatactcctctgttatgctgataaaatctattgaaaataactgaataacatgctaaaaataa 90  Q
    ||||||||| |  ||| ||||||||||||| ||||| ||||| ||| | |||||||||||| |||||||||| |||||    
T  41339 cataggcaattgatctaatactcctctgttttgctggtaaaacctactaaaaataactgaaaaacatgctaagaataa 41416  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000007; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 68 - 109
Target Start/End: Original strand, 30487896 - 30487937
Alignment:
Q  68 actgaataacatgctaaaaataatataagatgacttatcatc 109  Q
    |||||| |||||||| ||||||||||||||||||||||||||    
T  30487896 actgaaaaacatgctgaaaataatataagatgacttatcatc 30487937  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 13 - 90
Target Start/End: Complemental strand, 13313368 - 13313291
Alignment:
Q  13 cataggcaaattctcttatactcctctgttatgctgataaaatctattgaaaataactgaataacatgctaaaaataa 90  Q
    ||||||||| |  ||| |||||||||  || ||||| ||||| ||||||||||| |||||| |||||||||| |||||    
T  13313368 cataggcaattgttctaatactcctcctttttgctgctaaaacctattgaaaatgactgaaaaacatgctaagaataa 13313291  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 13 - 90
Target Start/End: Complemental strand, 30117755 - 30117678
Alignment:
Q  13 cataggcaaattctcttatactcctctgttatgctgataaaatctattgaaaataactgaataacatgctaaaaataa 90  Q
    ||||| ||| |||||| ||| |||| |||| ||||| ||||| ||| ||||||| | |||| ||||||||||||||||    
T  30117755 catagacaatttctctaatattcctatgttttgctggtaaaacctactgaaaatgaatgaaaaacatgctaaaaataa 30117678  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 13 - 101
Target Start/End: Complemental strand, 24380450 - 24380362
Alignment:
Q  13 cataggcaaattctcttatactcctctgttatgctgataaaatctattgaaaataactgaataacatgctaaaaataatataagatgac 101  Q
    ||||||||| |  ||| ||||||||||||| ||||| ||||| ||| ||||| | | |||| |||||||||| |||||  |||||||||    
T  24380450 cataggcaattgttctaatactcctctgttctgctggtaaaacctactgaaattgagtgaaaaacatgctaagaataacgtaagatgac 24380362  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000007; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 30 - 103
Target Start/End: Complemental strand, 23010123 - 23010050
Alignment:
Q  30 atactcctctgttatgctgataaaatctattgaaaataactgaataacatgctaaaaataatataagatgactt 103  Q
    ||||||||  ||| ||||| ||||| ||||||||||| |||||| |||||||||| |||||  |||||||||||    
T  23010123 atactccttcgttttgctggtaaaacctattgaaaatgactgaaaaacatgctaagaataacgtaagatgactt 23010050  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 25 - 101
Target Start/End: Original strand, 17891743 - 17891819
Alignment:
Q  25 ctcttatactcctctgttatgctgataaaatctattgaaaataactgaataacatgctaaaaataatataagatgac 101  Q
    |||| ||||||||||||| ||||| ||||| ||| ||||||| |||||| |||||| ||| |||||  |||||||||    
T  17891743 ctctaatactcctctgttttgctggtaaaacctactgaaaatgactgaaaaacatgttaagaataacgtaagatgac 17891819  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 25 - 99
Target Start/End: Complemental strand, 35680185 - 35680111
Alignment:
Q  25 ctcttatactcctctgttatgctgataaaatctattgaaaataactgaataacatgctaaaaataatataagatg 99  Q
    |||| ||||||||||||| ||||| ||||| ||| ||||||| ||| || |||||||||| |||||  |||||||    
T  35680185 ctctaatactcctctgttttgctggtaaaacctactgaaaatgacttaaaaacatgctaagaataacgtaagatg 35680111  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000007; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 30 - 103
Target Start/End: Original strand, 24901226 - 24901299
Alignment:
Q  30 atactcctctgttatgctgataaaatctattgaaaataactgaataacatgctaaaaataatataagatgactt 103  Q
    ||||| ||||||| ||||| ||||||||| ||||||| | |||| || |||||||||||||  |||||||||||    
T  24901226 atacttctctgttttgctggtaaaatctactgaaaatgattgaaaaatatgctaaaaataacgtaagatgactt 24901299  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 13 - 101
Target Start/End: Complemental strand, 22626251 - 22626163
Alignment:
Q  13 cataggcaaattctcttatactcctctgttatgctgataaaatctattgaaaataactgaataacatgctaaaaataatataagatgac 101  Q
    |||||| ||||||||| ||||||||||||| ||||| ||||| ||| | |||| || | || |||||||||| |||||  |||||||||    
T  22626251 cataggtaaattctctaatactcctctgttttgctggtaaaagctactaaaaaaaattcaaaaacatgctaagaataacgtaagatgac 22626163  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 58 - 100
Target Start/End: Original strand, 26581618 - 26581660
Alignment:
Q  58 attgaaaataactgaataacatgctaaaaataatataagatga 100  Q
    |||||||||||||||| |||||||||| |||||| ||||||||    
T  26581618 attgaaaataactgaaaaacatgctaagaataatgtaagatga 26581660  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 25 - 98
Target Start/End: Original strand, 21848638 - 21848711
Alignment:
Q  25 ctcttatactcctctgttatgctgataaaatctattgaaaataactgaataacatgctaaaaataatataagat 98  Q
    |||| ||||||||||||| |||| |||| | ||||| ||||  |||||| |||||||||| ||||| |||||||    
T  21848638 ctctaatactcctctgttttgctaataacacctattaaaaacgactgaaaaacatgctaagaataacataagat 21848711  T

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Target: scaffold0019 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 30 - 98
Target Start/End: Original strand, 35195 - 35263
Alignment:
Q  30 atactcctctgttatgctgataaaatctattgaaaataactgaataacatgctaaaaataatataagat 98  Q
    |||||||||| |||||   |||||| ||||||||||| |||||| |||||||||| ||||| |||||||    
T  35195 atactcctctattatggatataaaacctattgaaaatgactgaaaaacatgctaagaataacataagat 35263  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 32 - 98
Target Start/End: Complemental strand, 19387937 - 19387871
Alignment:
Q  32 actcctctgttatgctgataaaatctattgaaaataactgaataacatgctaaaaataatataagat 98  Q
    |||||||| || ||||| ||||| ||| ||||||| |||||| |||| ||||||||||| |||||||    
T  19387937 actcctctattttgctggtaaaacctactgaaaatgactgaaaaacaagctaaaaataacataagat 19387871  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 13 - 90
Target Start/End: Complemental strand, 3114806 - 3114729
Alignment:
Q  13 cataggcaaattctcttatactcctctgttatgctgataaaatctattgaaaataactgaataacatgctaaaaataa 90  Q
    ||||||||| | |||| ||||||||||||| ||||| ||||| ||| || |||  |||||| |||||||||| |||||    
T  3114806 cataggcaattactctaatactcctctgttttgctggtaaaacctactgtaaaagactgaaaaacatgctaagaataa 3114729  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 32 - 101
Target Start/End: Complemental strand, 22470480 - 22470411
Alignment:
Q  32 actcctctgttatgctgataaaatctattgaaaataactgaataacatgctaaaaataatataagatgac 101  Q
    ||||||||||| ||||| |||||  || ||||||| |||||| |||||||||| |||||  |||||||||    
T  22470480 actcctctgttttgctggtaaaacatactgaaaatgactgaaaaacatgctaagaataacgtaagatgac 22470411  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 30 - 90
Target Start/End: Original strand, 8765691 - 8765751
Alignment:
Q  30 atactcctctgttatgctgataaaatctattgaaaataactgaataacatgctaaaaataa 90  Q
    |||||||||| || ||| | ||||| ||||||||||| |||||| |||||||||| |||||    
T  8765691 atactcctcttttttgcagctaaaacctattgaaaatgactgaaaaacatgctaagaataa 8765751  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 30 - 90
Target Start/End: Original strand, 8770581 - 8770641
Alignment:
Q  30 atactcctctgttatgctgataaaatctattgaaaataactgaataacatgctaaaaataa 90  Q
    |||||||||| || ||| | ||||| ||||||||||| |||||| |||||||||| |||||    
T  8770581 atactcctcttttttgcagctaaaacctattgaaaatgactgaaaaacatgctaagaataa 8770641  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 13 - 89
Target Start/End: Complemental strand, 18457208 - 18457132
Alignment:
Q  13 cataggcaaattctcttatactcctctgttatgctgataaaatctattgaaaataactgaataacatgctaaaaata 89  Q
    ||||||||| |  ||| |||||||||  || ||||| ||||| ||| |||||||||||||||||||| |||| ||||    
T  18457208 cataggcaattgttctaatactcctcctttttgctgctaaaacctactgaaaataactgaataacatcctaagaata 18457132  T

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Target: scaffold0014 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 44 - 101
Target Start/End: Original strand, 192153 - 192210
Alignment:
Q  44 tgctgataaaatctattgaaaataactgaataacatgctaaaaataatataagatgac 101  Q
    ||||| ||||| ||||||||||| |||||| | ||||||||||||||  |||||||||    
T  192153 tgctgctaaaacctattgaaaatgactgaaaaccatgctaaaaataacgtaagatgac 192210  T

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