View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21210_low_8 (Length: 363)
Name: NF21210_low_8
Description: NF21210
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21210_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 308; Significance: 1e-173; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 9 - 348
Target Start/End: Complemental strand, 23243375 - 23243036
Alignment:
| Q |
9 |
gagatgaatcataagttagacgtttaattgctgcggtttcaatgcggcgaataaaggcgagttcgttggtttggaggaattgtttggcgaagtgaggggt |
108 |
Q |
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| T |
23243375 |
gagatgaatcataagttagacgtttgattgctgcggtttcaatgcggcgaataaaggcgagttcgttgatttggaggaattgtttggcggagtgaggggt |
23243276 |
T |
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| Q |
109 |
ggaagcgatcacgcagaggacagaagccatgttaagagtgaataatggaccgtatttggtggagagattgtggagggattgatggaggagaggacctaag |
208 |
Q |
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| T |
23243275 |
ggaagcgatcacgcagaggacggaacccatgttaagagtgaataatggaccgtatttggtggagagattgtggagggattgatggaggagaggacctaag |
23243176 |
T |
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| Q |
209 |
aggtgcatatggccaataattggaagtttgagaggaggtgatggagggaggtatttgtgattgcgacggttcaaatatggtcgaaaaagtaagtagcaaa |
308 |
Q |
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| T |
23243175 |
aggtgcatatggccaataattggaagtttgagaggaggtgatggagggaggtatttgtgattgcgacggttcaaatgtggtcgtaaaagtaagtagcaaa |
23243076 |
T |
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| Q |
309 |
caaaaactgaaagcaagaaagaaaatgccagtaatacttg |
348 |
Q |
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| T |
23243075 |
caaaaactgaaagcaagaaagaaaatgccaataatacttg |
23243036 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 60 - 268
Target Start/End: Original strand, 9400382 - 9400590
Alignment:
| Q |
60 |
taaaggcgagttcgttggtttggaggaattgtttggcgaagtgaggggtggaagcgatcacgcagaggacagaagccatgttaagagtgaataatggacc |
159 |
Q |
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| T |
9400382 |
taaaggcgtgttcgttgatttgaaggatttgttttgcgtagtgaggagtggatgcaacaacgcagaggacggaaccaaagttaagtgaaaatattggtcc |
9400481 |
T |
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| Q |
160 |
gtatttggtggagagattgtggagggattgatggaggagaggacctaagaggtgcatatggccaataattggaagtttgagaggaggtgatggagggagg |
259 |
Q |
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| T |
9400482 |
gtatttttgggagaggcggtcgaaggagtggtggagaaggggacctaacatgtgcatgtggccaatgatcggaagtttgaatagaggcgatggagggagg |
9400581 |
T |
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| Q |
260 |
tatttgtga |
268 |
Q |
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| T |
9400582 |
tttttgtga |
9400590 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 60 - 260
Target Start/End: Original strand, 9382913 - 9383113
Alignment:
| Q |
60 |
taaaggcgagttcgttggtttggaggaattgtttggcgaagtgaggggtggaagcgatcacgcagaggacagaagccatgttaagagtgaataatggacc |
159 |
Q |
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| T |
9382913 |
taaaggcatgttcgttgatttgaaggatttgttttgcgtagtgaggagtggatgcaacaacgcagaggacggaaccaaagttaagtgaaaatattggtcc |
9383012 |
T |
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| Q |
160 |
gtatttggtggagagattgtggagggattgatggaggagaggacctaagaggtgcatatggccaataattggaagtttgagaggaggtgatggagggagg |
259 |
Q |
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| T |
9383013 |
gtatttttgggagaggcggtcgaaggagtggtggagaaggggacctaacatgtgcatgtggccgatgatcggaagtttgaatagaggagatggagggagg |
9383112 |
T |
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| Q |
260 |
t |
260 |
Q |
| |
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| T |
9383113 |
t |
9383113 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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