View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21210_low_9 (Length: 351)
Name: NF21210_low_9
Description: NF21210
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21210_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 154; Significance: 1e-81; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 74 - 243
Target Start/End: Original strand, 23783686 - 23783855
Alignment:
| Q |
74 |
tcttaatccataatgattcatctattaacaatgaagttctgcgatcgcaatctagaccatgacaaaatgctttttgatgttcctgattgaaaccacataa |
173 |
Q |
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| T |
23783686 |
tcttaatccataatgattcatctattaacaatgaagttctgcgttcgcaatctagaccatgacaaaatgctttttggtgttccttattgaaaccacataa |
23783785 |
T |
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| Q |
174 |
tttgattgcaatttttctcaatattaagattgtgatgcaactgcgaccgcaatttaaaaccttggaaatg |
243 |
Q |
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| T |
23783786 |
tttgattgcaatttttctcaatattaagattgcgatgcaactgcgaccgcaatttaaaaccttggaaatg |
23783855 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 276 - 345
Target Start/End: Original strand, 23783854 - 23783923
Alignment:
| Q |
276 |
tgtagaaataccttttatgtagaatctctataatcctcctataatcatctagctcaaaagcagcctttga |
345 |
Q |
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| T |
23783854 |
tgtagaaataccttttatgtagaatctctataatcctcctataatcatctagctcaaaagcagcctttga |
23783923 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 20 - 65
Target Start/End: Original strand, 23783614 - 23783659
Alignment:
| Q |
20 |
gccctccaattcttcttttcaaatttagccaatctattttagaatt |
65 |
Q |
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| T |
23783614 |
gccctccaattcttcttttcaaatttagccaatctgttttagaatt |
23783659 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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