View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21211_high_10 (Length: 313)
Name: NF21211_high_10
Description: NF21211
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21211_high_10 |
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Alignment Details
Target: chr8 (Bit Score: 160; Significance: 3e-85; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 146 - 305
Target Start/End: Complemental strand, 42830164 - 42830005
Alignment:
| Q |
146 |
tcatactatttttgtttgaaaaatcttgtatgcgtatcaaattttgttatgttaaacaacttccataatttataggttggatgtatggtatagtagtctt |
245 |
Q |
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| T |
42830164 |
tcatactatttttgtttgaaaaatcttgtatgcgtatcaaattttgttatgttaaacaacttccataatttataggttggatgtatggtatagtagtctt |
42830065 |
T |
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| Q |
246 |
aagaataattacagaggatgatttgctgttgcatttctcagctctttgagagtctctgct |
305 |
Q |
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| T |
42830064 |
aagaataattacagaggatgatttgctgttgcatttctcagctctttgagagtctctgct |
42830005 |
T |
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Target: chr8; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 25 - 121
Target Start/End: Complemental strand, 42830289 - 42830193
Alignment:
| Q |
25 |
catcaggtgatgtgcccatgaagccactgaagaattacaataacattacataagaaaaagtttcctaatgctggctgaagaagtcaagttcaacaag |
121 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42830289 |
catcaggtgatgtgcccatgaagccactgaagaattacaataacattacataagaaaaagtttcctaatgctggctgaagaagtcaagttcaacaag |
42830193 |
T |
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