View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21211_high_11 (Length: 313)

Name: NF21211_high_11
Description: NF21211
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21211_high_11
NF21211_high_11
[»] chr1 (2 HSPs)
chr1 (104-306)||(47445404-47445606)
chr1 (21-54)||(47445620-47445653)
[»] chr4 (2 HSPs)
chr4 (104-296)||(27455221-27455413)
chr4 (142-284)||(49681708-49681850)
[»] chr6 (4 HSPs)
chr6 (104-306)||(17732438-17732640)
chr6 (104-306)||(30709794-30709996)
chr6 (104-296)||(15347726-15347918)
chr6 (104-306)||(6009057-6009253)
[»] chr3 (3 HSPs)
chr3 (104-306)||(50837881-50838083)
chr3 (104-296)||(54560327-54560519)
chr3 (104-306)||(47470995-47471196)
[»] chr7 (1 HSPs)
chr7 (104-296)||(36067616-36067808)
[»] scaffold0102 (1 HSPs)
scaffold0102 (104-294)||(32653-32843)
[»] chr5 (3 HSPs)
chr5 (104-306)||(5348017-5348219)
chr5 (104-306)||(36429583-36429785)
chr5 (154-306)||(26380043-26380195)
[»] chr8 (3 HSPs)
chr8 (104-306)||(14790971-14791173)
chr8 (104-292)||(20111922-20112111)
chr8 (104-146)||(18308869-18308911)
[»] chr2 (3 HSPs)
chr2 (118-296)||(10256012-10256190)
chr2 (104-296)||(4592919-4593105)
chr2 (104-157)||(10255974-10256027)


Alignment Details
Target: chr1 (Bit Score: 159; Significance: 1e-84; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 104 - 306
Target Start/End: Complemental strand, 47445606 - 47445404
Alignment:
Q  104 tttgttaccttcttgaattaatcaacaacaaccctttggaattcatcaacaacagaatgaataactgaaaaaatcatgaacttattggaaaaagaacaag 203  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||    
T  47445606 tttgttaccttcttgaattaatcaacaacaaccctttggaattcatcaacaacagaatgaataacagaaaaaatcatgaacttgttggaaaaagaacaag 47445507  T
Q  204 gtttgtgatgaatagcatgaacaacaacatcaacaacaacggttcttctctttctcatgatgttattgttccatcatcactcatatctcctctccaggat 303  Q
    |||| | |||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| |||||||||| ||||||| |||||||| ||| ||    
T  47445506 gtttataatgaatagcatgaacaacaacatcaacagcaacggttcttctcattctcatgatgttactgttccatcaccactcatgtctcctcttcagaat 47445407  T
Q  304 caa 306  Q
    |||    
T  47445406 caa 47445404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 54
Target Start/End: Complemental strand, 47445653 - 47445620
Alignment:
Q  21 acatcatcatcaacatcacacattctctaatgat 54  Q
    |||||||||||||||||||||||| |||||||||    
T  47445653 acatcatcatcaacatcacacattttctaatgat 47445620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 157; Significance: 2e-83; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 104 - 296
Target Start/End: Original strand, 27455221 - 27455413
Alignment:
Q  104 tttgttaccttcttgaattaatcaacaacaaccctttggaattcatcaacaacagaatgaataactgaaaaaatcatgaacttattggaaaaagaacaag 203  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||  ||||| ||||||||||| ||||||||||||||||    
T  27455221 tttgttaccttcttgaattaatcaacaacaaccctttggaattcatcaacaacaaaatgaataatagaaaagatcatgaacttgttggaaaaagaacaag 27455320  T
Q  204 gtttgtgatgaatagcatgaacaacaacatcaacaacaacggttcttctctttctcatgatgttattgttccatcatcactcatatctcctct 296  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||| ||||||||    
T  27455321 gtttatgatgaatagcatgaacaacaacatcaacaacaacggttcttctcattctcatgatgttactgttccatcatcactcatgtctcctct 27455413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 142 - 284
Target Start/End: Complemental strand, 49681850 - 49681708
Alignment:
Q  142 gaattcatcaacaacagaatgaataactgaaaaaatcatgaacttattggaaaaagaacaaggtttgtgatgaatagcatgaacaacaacatcaacaaca 241  Q
    |||||||||||||||| ||||||||||  |||| |||||||| || ||||||||||||||| |||| |||||||||||||||||||||||||||||||||    
T  49681850 gaattcatcaacaacataatgaataacataaaagatcatgaaattgttggaaaaagaacaacgtttatgatgaatagcatgaacaacaacatcaacaaca 49681751  T
Q  242 acggttcttctctttctcatgatgttattgttccatcatcact 284  Q
    ||| |||||||| |||||||||||||| |||||||||||||||    
T  49681750 acgattcttctcattctcatgatgttactgttccatcatcact 49681708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 155; Significance: 3e-82; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 104 - 306
Target Start/End: Complemental strand, 17732640 - 17732438
Alignment:
Q  104 tttgttaccttcttgaattaatcaacaacaaccctttggaattcatcaacaacagaatgaataactgaaaaaatcatgaacttattggaaaaagaacaag 203  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| ||||||||||||||||    
T  17732640 tttgttaccttcttgaattaatcaacaacaaccctttggaattcatcaacaacagaatgaataacagaaaagatcatgaacttgttggaaaaagaacaag 17732541  T
Q  204 gtttgtgatgaatagcatgaacaacaacatcaacaacaacggttcttctctttctcatgatgttattgttccatcatcactcatatctcctctccaggat 303  Q
    | || |||||||||||||||||| ||||||||||| ||||| |||||||| ||||||||||||||||||||||||||||||||| |||||||| ||| ||    
T  17732540 ggttatgatgaatagcatgaacaccaacatcaacagcaacgtttcttctcattctcatgatgttattgttccatcatcactcatgtctcctcttcagaat 17732441  T
Q  304 caa 306  Q
    |||    
T  17732440 caa 17732438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 151; E-Value: 7e-80
Query Start/End: Original strand, 104 - 306
Target Start/End: Original strand, 30709794 - 30709996
Alignment:
Q  104 tttgttaccttcttgaattaatcaacaacaaccctttggaattcatcaacaacagaatgaataactgaaaaaatcatgaacttattggaaaaagaacaag 203  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||  ||||| ||||||||||| || |||||||||||||    
T  30709794 tttgttaccttcttgaattaatcaacaacaaccctttggaattcatcaacaacaaaatgaataatagaaaagatcatgaacttgtttgaaaaagaacaag 30709893  T
Q  204 gtttgtgatgaatagcatgaacaacaacatcaacaacaacggttcttctctttctcatgatgttattgttccatcatcactcatatctcctctccaggat 303  Q
    |||| |||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| |||||||||||||||||| |||||||| ||| ||    
T  30709894 gtttatgatgaatagcatgaacaacaacatcaacagcaacggttcttctcattctcatgatgttactgttccatcatcactcatgtctcctcttcagaat 30709993  T
Q  304 caa 306  Q
    |||    
T  30709994 caa 30709996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 104 - 296
Target Start/End: Original strand, 15347726 - 15347918
Alignment:
Q  104 tttgttaccttcttgaattaatcaacaacaaccctttggaattcatcaacaacagaatgaataactgaaaaaatcatgaacttattggaaaaagaacaag 203  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| ||||||||||| ||||||||||||||||    
T  15347726 tttgttaccttcttaaattaatcaacaacaaccctttggaattcatcaacaacagaaagaataacagaaaagatcatgaacttgttggaaaaagaacaag 15347825  T
Q  204 gtttgtgatgaatagcatgaacaacaacatcaacaacaacggttcttctctttctcatgatgttattgttccatcatcactcatatctcctct 296  Q
    | || |||||||||||||||||| ||||||||||| ||||| |||||||| |||||||||| |||||||||||||||||||||| ||||||||    
T  15347826 ggttatgatgaatagcatgaacaccaacatcaacatcaacgtttcttctcattctcatgatattattgttccatcatcactcatgtctcctct 15347918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 104 - 306
Target Start/End: Complemental strand, 6009253 - 6009057
Alignment:
Q  104 tttgttaccttcttgaattaatcaacaacaaccctttggaattcatcaacaacagaatgaataactgaaaaaatcatgaacttattggaaaaagaacaag 203  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||| ||| || |||| ||||||||||||||||    
T  6009253 tttgttaccttcttgaattaatcaacaacaaccctttggaattcatcaacaacaaaatgaataacagaaaagatcgtggacttgttggaaaaagaacaag 6009154  T
Q  204 gtttgtgatgaatagcatgaacaacaacatcaacaacaacggttcttctctttctcatgatgttattgttccatcatcactcatatctcctctccaggat 303  Q
    | || |||||||||||||||||| ||||||||||| ||| | |||||||| ||||||      ||||||||||||||||||||| |||||||| ||| ||    
T  6009153 ggttatgatgaatagcatgaacaccaacatcaacatcaatgtttcttctcattctca------tattgttccatcatcactcatgtctcctcttcagaat 6009060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 155; Significance: 3e-82; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 104 - 306
Target Start/End: Complemental strand, 50838083 - 50837881
Alignment:
Q  104 tttgttaccttcttgaattaatcaacaacaaccctttggaattcatcaacaacagaatgaataactgaaaaaatcatgaacttattggaaaaagaacaag 203  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| ||||||||||||||||    
T  50838083 tttgttaccttcttgaattaatcaacaacaaccctttggaattcatcaacaacagaatgaataacagaaaagatcatgaacttgttggaaaaagaacaag 50837984  T
Q  204 gtttgtgatgaatagcatgaacaacaacatcaacaacaacggttcttctctttctcatgatgttattgttccatcatcactcatatctcctctccaggat 303  Q
    | || |||||||||||||||||| ||||||||||| ||||| |||||||| ||||||||||||||||||||||||||||||||| |||||||| ||| ||    
T  50837983 ggttatgatgaatagcatgaacaccaacatcaacagcaacgtttcttctcattctcatgatgttattgttccatcatcactcatgtctcctcttcagaat 50837884  T
Q  304 caa 306  Q
    |||    
T  50837883 caa 50837881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 104 - 296
Target Start/End: Original strand, 54560327 - 54560519
Alignment:
Q  104 tttgttaccttcttgaattaatcaacaacaaccctttggaattcatcaacaacagaatgaataactgaaaaaatcatgaacttattggaaaaagaacaag 203  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||| ||||| ||||||||||| ||||||||||||||||    
T  54560327 tttgttaccttcttgaattaatcaactacaaccctttggaattcatcaacaacagaaagaataacagaaaagatcatgaacttgttggaaaaagaacaag 54560426  T
Q  204 gtttgtgatgaatagcatgaacaacaacatcaacaacaacggttcttctctttctcatgatgttattgttccatcatcactcatatctcctct 296  Q
    | || |||||||||||||||||| ||||||||||| ||||| |||||||| ||||||||||||||||||||||||||||||||| ||||||||    
T  54560427 ggttatgatgaatagcatgaacaccaacatcaacatcaacgtttcttctcattctcatgatgttattgttccatcatcactcatgtctcctct 54560519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 104 - 306
Target Start/End: Original strand, 47470995 - 47471196
Alignment:
Q  104 tttgttaccttcttgaattaatcaacaacaaccctttggaattcatcaacaacagaatgaataactgaaaaaatcatgaacttattggaaaaagaacaag 203  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||  ||||| ||||||||||| ||||||||||||||||    
T  47470995 tttgttaccttcttgaattaatcaacaacaaccctttggaat-catcaacaacaaaatgaataatagaaaagatcatgaacttgttggaaaaagaacaag 47471093  T
Q  204 gtttgtgatgaatagcatgaacaacaacatcaacaacaacggttcttctctttctcatgatgttattgttccatcatcactcatatctcctctccaggat 303  Q
    |||| | |||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| |||||||||||||||||| |||||||| ||| ||    
T  47471094 gtttataatgaatagcatgaacaacaacatcaacatcaacggttcttctcattctcatgatgttactgttccatcatcactcatgtctcctcttcagaat 47471193  T
Q  304 caa 306  Q
    |||    
T  47471194 caa 47471196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 153; Significance: 4e-81; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 104 - 296
Target Start/End: Original strand, 36067616 - 36067808
Alignment:
Q  104 tttgttaccttcttgaattaatcaacaacaaccctttggaattcatcaacaacagaatgaataactgaaaaaatcatgaacttattggaaaaagaacaag 203  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| ||||||||||||||||    
T  36067616 tttgttaccttcttgaattaatcaacaacaaccctttggaattcatcaacaacagaatgaataacagaaaagatcatgaacttgttggaaaaagaacaag 36067715  T
Q  204 gtttgtgatgaatagcatgaacaacaacatcaacaacaacggttcttctctttctcatgatgttattgttccatcatcactcatatctcctct 296  Q
    |||| ||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||| ||||||||| | |||||| ||||||||    
T  36067716 gtttatgatgaatagcatgaacaacaacatcaacaataacggttcttctcattctcatgatgttactgttccatcgtaactcatgtctcctct 36067808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0102 (Bit Score: 151; Significance: 7e-80; HSPs: 1)
Name: scaffold0102
Description:

Target: scaffold0102; HSP #1
Raw Score: 151; E-Value: 7e-80
Query Start/End: Original strand, 104 - 294
Target Start/End: Original strand, 32653 - 32843
Alignment:
Q  104 tttgttaccttcttgaattaatcaacaacaaccctttggaattcatcaacaacagaatgaataactgaaaaaatcatgaacttattggaaaaagaacaag 203  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||  ||||| ||||||||||| ||||||||||||||||    
T  32653 tttgttaccttcttgaattaatcaacaacaaccctttgaaattcatcaacaacagaatgaataatagaaaatatcatgaacttgttggaaaaagaacaag 32752  T
Q  204 gtttgtgatgaatagcatgaacaacaacatcaacaacaacggttcttctctttctcatgatgttattgttccatcatcactcatatctcct 294  Q
    |||| |||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| |||||||||||||||||| ||||||    
T  32753 gtttatgatgaatagcatgaacaacaacatcaacagcaacggttcttctcattctcatgatgttactgttccatcatcactcatgtctcct 32843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 151; Significance: 7e-80; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 151; E-Value: 7e-80
Query Start/End: Original strand, 104 - 306
Target Start/End: Original strand, 5348017 - 5348219
Alignment:
Q  104 tttgttaccttcttgaattaatcaacaacaaccctttggaattcatcaacaacagaatgaataactgaaaaaatcatgaacttattggaaaaagaacaag 203  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| ||||||||||| ||||||||||||||||    
T  5348017 tttgttaccttcttgaattaatcaacaacaaccctttggaattcatcaacaacagaaagaataacagaaaagatcatgaacttgttggaaaaagaacaag 5348116  T
Q  204 gtttgtgatgaatagcatgaacaacaacatcaacaacaacggttcttctctttctcatgatgttattgttccatcatcactcatatctcctctccaggat 303  Q
    | || |||||||||||||||||| ||||||||||| ||||| |||||||| ||||||||||||||||||||||||||||||||| |||||||| ||| ||    
T  5348117 ggttatgatgaatagcatgaacaccaacatcaacatcaacgtttcttctcattctcatgatgttattgttccatcatcactcatgtctcctcttcagaat 5348216  T
Q  304 caa 306  Q
    |||    
T  5348217 caa 5348219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 104 - 306
Target Start/End: Original strand, 36429583 - 36429785
Alignment:
Q  104 tttgttaccttcttgaattaatcaacaacaaccctttggaattcatcaacaacagaatgaataactgaaaaaatcatgaacttattggaaaaagaacaag 203  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||  ||||| ||||||||||| || |||||||||||||    
T  36429583 tttgttaccttcttgaattaatcaacaacaaccttttggaattcatcaacaacaaaatgaataatagaaaagatcatgaacttgtttgaaaaagaacaag 36429682  T
Q  204 gtttgtgatgaatagcatgaacaacaacatcaacaacaacggttcttctctttctcatgatgttattgttccatcatcactcatatctcctctccaggat 303  Q
    |||| |||||||||||||| ||||||||||||||| |||||||||||||| |||||||||||||| |||||||||||||||||| |||||||| ||| ||    
T  36429683 gtttatgatgaatagcatggacaacaacatcaacagcaacggttcttctcattctcatgatgttactgttccatcatcactcatgtctcctcttcagaat 36429782  T
Q  304 caa 306  Q
    |||    
T  36429783 caa 36429785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 154 - 306
Target Start/End: Original strand, 26380043 - 26380195
Alignment:
Q  154 aacagaatgaataactgaaaaaatcatgaacttattggaaaaagaacaaggtttgtgatgaatagcatgaacaacaacatcaacaacaacggttcttctc 253  Q
    ||||||||||||||| ||||| ||||||||||| |||||||||||||||||||| ||||||||| ||| ||||||| || || |||||| ||||||||||    
T  26380043 aacagaatgaataacagaaaagatcatgaacttgttggaaaaagaacaaggtttatgatgaataacattaacaacagcaacagcaacaatggttcttctc 26380142  T
Q  254 tttctcatgatgttattgttccatcatcactcatatctcctctccaggatcaa 306  Q
     |||||||||||||| |||||||||||||||||| |||| ||| ||| |||||    
T  26380143 attctcatgatgttactgttccatcatcactcatgtctcatcttcagaatcaa 26380195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 147; Significance: 2e-77; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 104 - 306
Target Start/End: Original strand, 14790971 - 14791173
Alignment:
Q  104 tttgttaccttcttgaattaatcaacaacaaccctttggaattcatcaacaacagaatgaataactgaaaaaatcatgaacttattggaaaaagaacaag 203  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| ||||||||||| ||||||||||||||||    
T  14790971 tttgttaccttcttcaattaatcaacaacaaccctttggaattcatcaacaacagaaagaataacagaaaatatcatgaacttgttggaaaaagaacaag 14791070  T
Q  204 gtttgtgatgaatagcatgaacaacaacatcaacaacaacggttcttctctttctcatgatgttattgttccatcatcactcatatctcctctccaggat 303  Q
    | || |||||||||||||||||| ||||||||||| ||||| |||||||| ||||||||||||||||||||||||||||||||| |||||||| ||| ||    
T  14791071 ggttatgatgaatagcatgaacaccaacatcaacatcaacgtttcttctcattctcatgatgttattgttccatcatcactcatgtctcctcttcagaat 14791170  T
Q  304 caa 306  Q
    |||    
T  14791171 caa 14791173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 104 - 292
Target Start/End: Complemental strand, 20112111 - 20111922
Alignment:
Q  104 tttgttaccttcttgaattaatcaacaacaaccctttggaattcatcaacaacagaatgaataactgaaaaaatcatgaacttattggaaaaagaacaag 203  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||  ||||| ||||||||||| ||||||||||||||||    
T  20112111 tttgttaccttcttgaattaatcaacagcaaccctttggaattcatcaacaacaaaatgaataatagaaaagatcatgaacttgttggaaaaagaacaag 20112012  T
Q  204 g-tttgtgatgaatagcatgaacaacaacatcaacaacaacggttcttctctttctcatgatgttattgttccatcatcactcatatctc 292  Q
    | ||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||| ||||    
T  20112011 gttttatgatgaatagcatgaacaacaacatcaacaacaacggttcttctcattctcatgatgttactgttccatcatcactcatgtctc 20111922  T

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Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 104 - 146
Target Start/End: Original strand, 18308869 - 18308911
Alignment:
Q  104 tttgttaccttcttgaattaatcaacaacaaccctttggaatt 146  Q
    ||||||||| |||||||||||||||||||||| ||||||||||    
T  18308869 tttgttaccatcttgaattaatcaacaacaactctttggaatt 18308911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 135; Significance: 2e-70; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 118 - 296
Target Start/End: Original strand, 10256012 - 10256190
Alignment:
Q  118 gaattaatcaacaacaaccctttggaattcatcaacaacagaatgaataactgaaaaaatcatgaacttattggaaaaagaacaaggtttgtgatgaata 217  Q
    ||||| |||||||||||||||||||||||||||||||||| |||||||||  ||||| ||||||||||| |||||||||||||||||||| |||||||||    
T  10256012 gaattcatcaacaacaaccctttggaattcatcaacaacaaaatgaataatagaaaagatcatgaacttgttggaaaaagaacaaggtttatgatgaata 10256111  T
Q  218 gcatgaacaacaacatcaacaacaacggttcttctctttctcatgatgttattgttccatcatcactcatatctcctct 296  Q
    ||||||||||||||||||||| |||||||||||||| |||||||||||||| |||||||||||||||||| ||||||||    
T  10256112 gcatgaacaacaacatcaacagcaacggttcttctcattctcatgatgttactgttccatcatcactcatgtctcctct 10256190  T

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Target: chr2; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 104 - 296
Target Start/End: Original strand, 4592919 - 4593105
Alignment:
Q  104 tttgttaccttcttgaattaatcaacaacaaccctttggaattcatcaacaacagaatgaataactgaaaaaatcatgaacttattggaaaaagaacaag 203  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| ||||||||||| ||||||||||||||||    
T  4592919 tttgttaccttcttgaattaatcaacaacaaccctttggaattcatcaacaacagaaagaataacagaaaagatcatgaacttgttggaaaaagaacaag 4593018  T
Q  204 gtttgtgatgaatagcatgaacaacaacatcaacaacaacggttcttctctttctcatgatgttattgttccatcatcactcatatctcctct 296  Q
    | || |||||||||||||||||| ||||||      ||||| |||||||| ||||||||||||||||||||||||||||||||| ||||||||    
T  4593019 ggttatgatgaatagcatgaacaccaacat------caacgtttcttctcattctcatgatgttattgttccatcatcactcatgtctcctct 4593105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 104 - 157
Target Start/End: Original strand, 10255974 - 10256027
Alignment:
Q  104 tttgttaccttcttgaattaatcaacaacaaccctttggaattcatcaacaaca 157  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10255974 tttgttaccttcttgaattaatcaacaacaaccctttggaattcatcaacaaca 10256027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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