View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21211_high_14 (Length: 302)
Name: NF21211_high_14
Description: NF21211
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21211_high_14 |
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Alignment Details
Target: chr1 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 10 - 278
Target Start/End: Complemental strand, 33688390 - 33688125
Alignment:
| Q |
10 |
attattcttgcatccaatttctaaaactttttattttcatattgattaataaaataagttatgatatttttctttaatttcactttagtcatttgcaacc |
109 |
Q |
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| T |
33688390 |
attattcttgcatccaatttctaaaactttttattttcatattgattaataaaataagttatgatatttttctttaatttcactttagtcatttgcaacc |
33688291 |
T |
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| Q |
110 |
cagatgagttttgcaaaggtttgcatatgatgaagtaataagcatttgatgcgtaaaataaccggcttgttccctgcataatgctccctgaacttttcat |
209 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| || |
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| T |
33688290 |
cagatgagttttgcaaaggtttgcat---atgaagtaataagcatttgatgcgtaaaataactggcttgttccctgcataatgctccctgaacttttgat |
33688194 |
T |
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| Q |
210 |
ttttccaggtaagtccagtatttttgcataataatctgcctacagttccaccaacagccccacctgatg |
278 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||| |
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| T |
33688193 |
ttttccaggtaagtccagtatttttgcataataatctgcctacagttccaccaacagcaccgcctgatg |
33688125 |
T |
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