View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21211_high_15 (Length: 301)
Name: NF21211_high_15
Description: NF21211
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21211_high_15 |
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Alignment Details
Target: chr5 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 16 - 292
Target Start/End: Original strand, 1231760 - 1232036
Alignment:
| Q |
16 |
gatggacatcatcagaaagctgaagagctggttaaatcacctagaaagcaggaatctcaatctgaaaatgagagtgatgaatcagatgttgtggaacatg |
115 |
Q |
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| T |
1231760 |
gatggacatcatgagaaagctgaagagctggttaaatcacctagaaagcaggaatctcaatctgaaaatgagagtgatgaatcagatgttgtggaacatg |
1231859 |
T |
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| Q |
116 |
atgtgagtatctttcctttcctttcctttatgttgatcttcttcggctgaaattaaacttgattgagatgaaaatggaaggagtgtaatgtaatggcata |
215 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
1231860 |
atgtgagtatctttcctttcctttcatttatgttgatcttcttcggctgaaattaaacttgattgagatgaaaatggaaggagtgtaatgtaacggcata |
1231959 |
T |
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| Q |
216 |
tgtggagatgcttaacctcaattcatatttttaactgtggtgattgaaaaataggtgaaggtatgcgacatctgtgg |
292 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1231960 |
tgtggagatgcttaacctcaattcatatttctaactgtggtgattgaaaaataggtgaaggtatgcgacatctgtgg |
1232036 |
T |
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