View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21211_high_7 (Length: 342)

Name: NF21211_high_7
Description: NF21211
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21211_high_7
NF21211_high_7
[»] chr7 (12 HSPs)
chr7 (30-319)||(36221861-36222144)
chr7 (30-317)||(36217870-36218151)
chr7 (76-317)||(35938858-35939093)
chr7 (73-317)||(32727098-32727336)
chr7 (76-298)||(35981560-35981776)
chr7 (76-298)||(36002972-36003188)
chr7 (36-317)||(35946312-35946587)
chr7 (76-317)||(35976975-35977210)
chr7 (76-317)||(35998387-35998622)
chr7 (113-317)||(35951951-35952150)
chr7 (76-317)||(35957520-35957755)
chr7 (78-163)||(29743730-29743814)
[»] chr1 (2 HSPs)
chr1 (74-317)||(18117587-18117824)
chr1 (78-316)||(18125241-18125473)


Alignment Details
Target: chr7 (Bit Score: 246; Significance: 1e-136; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 30 - 319
Target Start/End: Original strand, 36221861 - 36222144
Alignment:
Q  30 ccttcgtatattttggaaggtctttcgcaagagagctatttgtatttgtttgtgaaatgggcatttaaagacggagaagaaagaaaaatattcaaatcta 129  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  36221861 ccttcgtatattttggaaggtctttcgcaagagagctgtttgtatttgtttgtgaaatgggcatttaaagacggagaagaa-gaaaaatattcaaatcta 36221959  T
Q  130 gtggagattggaaaagaaattgtgaagaaatgtgctggagttccgctggctgtcaaaacattaggaagttctctattctcaaaatttgatttaaattaaa 229  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||     |||||    
T  36221960 gtggagattggaaaagaaattgtgaaaaaatgtgctggagttccgctggctgtcaaaacattaggaagttctctgttatcaaaatttgat-----ttaaa 36222054  T
Q  230 taagtggatattcgtaagagaccatgagatttggaacttagaacaaaagaaaggtgatattttacctgcattaaaattaagctatgatga 319  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36222055 taagtggatattcgtaagagaccatgagatttggaacttagaacaaaagaaaggtgatattttacctgcattaaaattaagctatgatga 36222144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 30 - 317
Target Start/End: Original strand, 36217870 - 36218151
Alignment:
Q  30 ccttcgtatattttggaaggtctttcgcaagagagctatttgtatttgtttgtgaaatgggcatttaaagacggagaagaaagaaaaatattcaaatcta 129  Q
    ||||||||| |||||||||||||||||  ||||   | ||||| | ||||||||||||||||||| || || ||||||||| ||||||||| ||||||||    
T  36217870 ccttcgtatgttttggaaggtctttcgttagaggattgtttgtctctgtttgtgaaatgggcattcaaggatggagaagaa-gaaaaatatccaaatcta 36217968  T
Q  130 gtggagattggaaaagaaattgtgaagaaatgtgctggagttccgctggctgtcaaaacattaggaagttctctattctcaaaatttgatttaaattaaa 229  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||| | |||  ||||||||||||| |||||||||||||||||| ||        
T  36217969 gtggagattggaaaagaaattgtgaaaaaatgtgctggagttccgctggctgtgagaacggtaggaagttctctgttctcaaaatttgatttagat---- 36218064  T
Q  230 taagtggatattcgtaagagaccatgagatttggaacttagaacaaaagaaaggtgatattttacctgcattaaaattaagctatgat 317  Q
     |||||| |||| ||||||||||||||||| ||||| |||||||| ||||||| ||||||||||||||| ||||||||||||||||||    
T  36218065 -aagtggttatttgtaagagaccatgagatatggaatttagaacagaagaaagatgatattttacctgctttaaaattaagctatgat 36218151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 76 - 317
Target Start/End: Complemental strand, 35939093 - 35938858
Alignment:
Q  76 tgtttgtgaaatgggcatttaaagacggagaagaaagaaaaatattcaaatctagtggagattggaaaagaaattgtgaagaaatgtgctggagttccgc 175  Q
    ||||||| ||||  |||||||| || || |||||| ||||||||| ||||||| ||| |||||| ||| ||||||||||| ||||||   |||||||| |    
T  35939093 tgtttgtcaaatcagcatttaaggaaggtgaagaa-gaaaaatatccaaatcttgtgaagattgcaaaggaaattgtgaaaaaatgtcaaggagttccac 35938995  T
Q  176 tggctgtcaaaacattaggaagttctctattctcaaaatttgatttaaattaaataagtggatattcgtaagagaccatgagatttggaacttagaacaa 275  Q
    ||||||| |||||||||||||||||||| || ||||||||||||||||||     ||||||  ||| ||||||||   |||||| ||||| ||||||||     
T  35938994 tggctgtgaaaacattaggaagttctctgttttcaaaatttgatttaaat-----aagtgggaatttgtaagagattctgagatatggaatttagaacag 35938900  T
Q  276 aagaaaggtgatattttacctgcattaaaattaagctatgat 317  Q
    ||| ||  |||||||||||||||| |||||||||||||||||    
T  35938899 aagcaaaatgatattttacctgcactaaaattaagctatgat 35938858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 73 - 317
Target Start/End: Complemental strand, 32727336 - 32727098
Alignment:
Q  73 atttgtttgtgaaatgggcatttaaagacggagaagaaagaaaaatattcaaatctagtggagattggaaaagaaattgtgaagaaatgtgctggagttc 172  Q
    |||||||||| |||||||||||||| || || |||| | |  |||||| || |||| ||| | ||||| |||||||||||||| |||||||| || ||||    
T  32727336 atttgtttgtcaaatgggcatttaaggaaggtgaagta-gttaaatatccagatctcgtgcatattggcaaagaaattgtgaaaaaatgtgcaggggttc 32727238  T
Q  173 cgctggctgtcaaaacattaggaagttctctattctcaaaatttgatttaaattaaataagtggatattcgtaagagaccatgagatttggaacttagaa 272  Q
    | ||  |||| | ||||||| |||||||  |||||||||||| ||||||||||     ||||||||||| || |||||   |||||| ||||| ||||||    
T  32727237 cactttctgtgagaacattacgaagttccttattctcaaaatatgatttaaat-----aagtggatatttgtgagagattctgagatatggaatttagaa 32727143  T
Q  273 caaaagaaaggtgatattttacctgcattaaaattaagctatgat 317  Q
    || ||||||| |||||||||||||||||| || ||||||||||||    
T  32727142 cagaagaaagatgatattttacctgcattgaagttaagctatgat 32727098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 76 - 298
Target Start/End: Complemental strand, 35981776 - 35981560
Alignment:
Q  76 tgtttgtgaaatgggcatttaaagacggagaagaaagaaaaatattcaaatctagtggagattggaaaagaaattgtgaagaaatgtgctggagttccgc 175  Q
    ||||||| |||||||||||||| || || ||||||| |||| ||| ||||||||||||| || ||||||||||||||||| ||||||   |||||||| |    
T  35981776 tgtttgtcaaatgggcatttaaggaaggtgaagaaacaaaa-tatccaaatctagtggatatcggaaaagaaattgtgaaaaaatgtcgaggagttccac 35981678  T
Q  176 tggctgtcaaaacattaggaagttctctattctcaaaatttgatttaaattaaataagtggatattcgtaagagaccatgagatttggaacttagaacaa 275  Q
    | ||||||||||||||||||||||| || || |||||  |||||||     |||||||||| |||| ||||| ||   |||| | |||||  |||| ||     
T  35981677 tagctgtcaaaacattaggaagttccctgttttcaaagcttgattt-----aaataagtgggtatttgtaagggattctgagttatggaatctagagcag 35981583  T
Q  276 aagaaaggtgatattttacctgc 298  Q
    ||||||| |||||||||||||||    
T  35981582 aagaaagatgatattttacctgc 35981560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 76 - 298
Target Start/End: Complemental strand, 36003188 - 36002972
Alignment:
Q  76 tgtttgtgaaatgggcatttaaagacggagaagaaagaaaaatattcaaatctagtggagattggaaaagaaattgtgaagaaatgtgctggagttccgc 175  Q
    ||||||| |||||||||||||| || || ||||||| |||| ||| ||||||||||||| || ||||||||||||||||| ||||||   |||||||| |    
T  36003188 tgtttgtcaaatgggcatttaaggaaggtgaagaaacaaaa-tatccaaatctagtggatatcggaaaagaaattgtgaaaaaatgtcgaggagttccac 36003090  T
Q  176 tggctgtcaaaacattaggaagttctctattctcaaaatttgatttaaattaaataagtggatattcgtaagagaccatgagatttggaacttagaacaa 275  Q
    | ||||||||||||||||||||||| || || |||||  |||||||     |||||||||| |||| ||||| ||   |||| | |||||  |||| ||     
T  36003089 tagctgtcaaaacattaggaagttccctgttttcaaagcttgattt-----aaataagtgggtatttgtaagggattctgagttatggaatctagagcag 36002995  T
Q  276 aagaaaggtgatattttacctgc 298  Q
    ||||||| |||||||||||||||    
T  36002994 aagaaagatgatattttacctgc 36002972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 36 - 317
Target Start/End: Complemental strand, 35946587 - 35946312
Alignment:
Q  36 tatattttggaaggtctttcgcaagagagctatttgtatttgtttgtgaaatgggcatttaaagacggagaagaaagaaaaatattcaaatctagtggag 135  Q
    |||||||||||||||||||| | | |||  | ||||| | ||||||| ||||||||||| || || || ||||||| |||| ||| |||||||||| | |    
T  35946587 tatattttggaaggtctttctccaaagaattgtttgtctctgtttgtcaaatgggcattcaaggaaggtgaagaaa-aaaagtatccaaatctagtagcg 35946489  T
Q  136 attggaaaagaaattgtgaagaaatgtgctggagttccgctggctgtcaaaacattaggaagttctctattctcaaaatttgatttaaattaaataagtg 235  Q
    || ||||||||||||||||| |||||    || ||||| || || || | |||||||| ||||||||| |||||||| ||||||      ||| ||||||    
T  35946488 ataggaaaagaaattgtgaaaaaatgccaaggggttccactagccgtgagaacattagcaagttctctcttctcaaactttgat-----ataagtaagtg 35946394  T
Q  236 gatattcgtaagagaccatgagatttggaacttagaacaaaagaaaggtgatattttacctgcattaaaattaagctatgat 317  Q
    |  |||||| || |||  |||||| ||||| |||||||||||||||| |||||| ||||||||  |||||||||| ||||||    
T  35946393 ggaattcgttagggactctgagatgtggaatttagaacaaaagaaagatgatatcttacctgcgctaaaattaagttatgat 35946312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 76 - 317
Target Start/End: Complemental strand, 35977210 - 35976975
Alignment:
Q  76 tgtttgtgaaatgggcatttaaagacggagaagaaagaaaaatattcaaatctagtggagattggaaaagaaattgtgaagaaatgtgctggagttccgc 175  Q
    ||||||| |||||||| || || || || ||||||| |||||||| |||||||||| ||||| |||||||||||||| || || ||    || |||||||    
T  35977210 tgtttgtcaaatgggcgttcaaggaaggcgaagaaa-aaaaatatccaaatctagtagagatcggaaaagaaattgtaaaaaagtgccaaggggttccgc 35977112  T
Q  176 tggctgtcaaaacattaggaagttctctattctcaaaatttgatttaaattaaataagtggatattcgtaagagaccatgagatttggaacttagaacaa 275  Q
    | ||||| | |||||||||||||||||| |||||||| |||||| |||       ||||||  |||||| || |||  |||||| ||||| |||||||||    
T  35977111 tagctgtgagaacattaggaagttctctcttctcaaactttgatataagc-----aagtgggaattcgttagggactctgagatgtggaatttagaacaa 35977017  T
Q  276 aagaaaggtgatattttacctgcattaaaattaagctatgat 317  Q
    ||||||| || ||||||||||||  |||||||||||||||||    
T  35977016 aagaaagatggtattttacctgcgctaaaattaagctatgat 35976975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 76 - 317
Target Start/End: Complemental strand, 35998622 - 35998387
Alignment:
Q  76 tgtttgtgaaatgggcatttaaagacggagaagaaagaaaaatattcaaatctagtggagattggaaaagaaattgtgaagaaatgtgctggagttccgc 175  Q
    ||||||| |||||||| || || || || ||||||| |||||||| |||||||||| ||||| |||||||||||||| || || ||    || |||||||    
T  35998622 tgtttgtcaaatgggcgttcaaggaaggcgaagaaa-aaaaatatccaaatctagtagagatcggaaaagaaattgtaaaaaagtgccaaggggttccgc 35998524  T
Q  176 tggctgtcaaaacattaggaagttctctattctcaaaatttgatttaaattaaataagtggatattcgtaagagaccatgagatttggaacttagaacaa 275  Q
    | ||||| | |||||||||||||||||| |||||||| |||||| |||       ||||||  |||||| || |||  |||||| ||||| |||||||||    
T  35998523 tagctgtgagaacattaggaagttctctcttctcaaactttgatataagc-----aagtgggaattcgttagggactctgagatgtggaatttagaacaa 35998429  T
Q  276 aagaaaggtgatattttacctgcattaaaattaagctatgat 317  Q
    ||||||| || ||||||||||||  |||||||||||||||||    
T  35998428 aagaaagatggtattttacctgcgctaaaattaagctatgat 35998387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 113 - 317
Target Start/End: Complemental strand, 35952150 - 35951951
Alignment:
Q  113 aaaaatattcaaatctagtggagattggaaaagaaattgtgaagaaatgtgctggagttccgctggctgtcaaaacattaggaagttctctattctcaaa 212  Q
    |||||||| |||||||||| |||||||||||||| | |||||| ||||||   || ||||| |||||||| ||| |||| |||||||| || ||||||||    
T  35952150 aaaaatatccaaatctagtagagattggaaaagatactgtgaaaaaatgtcaaggggttccactggctgtgaaatcattgggaagttccctcttctcaaa 35952051  T
Q  213 atttgatttaaattaaataagtggatattcgtaagagaccatgagatttggaacttagaacaaaagaaaggtgatattttacctgcattaaaattaagct 312  Q
     || |||     |||| |||||||  ||| || ||||||  ||  |||||||| ||||||||| |||||| |||||||||||||||  | ||||||||||    
T  35952050 cttcgat-----ttaagtaagtgggaatttgtcagagactctgctatttggaatttagaacaacagaaagatgatattttacctgccctgaaattaagct 35951956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 76 - 317
Target Start/End: Complemental strand, 35957755 - 35957520
Alignment:
Q  76 tgtttgtgaaatgggcatttaaagacggagaagaaagaaaaatattcaaatctagtggagattggaaaagaaattgtgaagaaatgtgctggagttccgc 175  Q
    ||||||| ||||||||||| || || || ||||||| |||| ||| |||||| ||| ||||||||||||||||||||||| |||||    || ||||| |    
T  35957755 tgtttgtcaaatgggcattcaaggaaggcgaagaaa-aaaattatccaaatcaagtagagattggaaaagaaattgtgaaaaaatgccaaggggttccac 35957657  T
Q  176 tggctgtcaaaacattaggaagttctctattctcaaaatttgatttaaattaaataagtggatattcgtaagagaccatgagatttggaacttagaacaa 275  Q
    | || || | ||| |||| ||||||||| |||||||| ||||||      ||| |||||||  ||| || || |||  |||||| ||||| |||||||||    
T  35957656 tagccgtgagaactttagcaagttctctcttctcaaactttgat-----ataagtaagtgggaatttgttagggactctgagatgtggaatttagaacaa 35957562  T
Q  276 aagaaaggtgatattttacctgcattaaaattaagctatgat 317  Q
    ||||    |||||||||||||||  |||||||||| ||||||    
T  35957561 aagattaatgatattttacctgcgctaaaattaagttatgat 35957520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 78 - 163
Target Start/End: Original strand, 29743730 - 29743814
Alignment:
Q  78 tttgtgaaatgggcatttaaagacggagaagaaagaaaaatattcaaatctagtggagattggaaaagaaattgtgaagaaatgtg 163  Q
    ||||| ||||||||||||||||| |||||||| | |||||||| ||||  |  | |||||||| |||||||||||| | |||||||    
T  29743730 tttgtcaaatgggcatttaaagagggagaagaca-aaaaatatccaaaattgatagagattgggaaagaaattgtgcaaaaatgtg 29743814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 72; Significance: 1e-32; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 74 - 317
Target Start/End: Complemental strand, 18117824 - 18117587
Alignment:
Q  74 tttgtttgtgaaatgggcatttaaagacggagaagaaagaaaaatattcaaatctagtggagattggaaaagaaattgtgaagaaatgtgctggagttcc 173  Q
    ||||||||||||||||||||| || || || |||||| || |||||| |||||||||| ||||| ||||||||||||||||||||||| || || |||||    
T  18117824 tttgtttgtgaaatgggcattcaaggaaggcgaagaa-gacaaatatccaaatctagttgagataggaaaagaaattgtgaagaaatgcgcgggggttcc 18117726  T
Q  174 gctggctgtcaaaacattaggaagttctctattctcaaaatttgatttaaattaaataagtggatattcgtaagagaccatgagatttggaacttagaac 273  Q
     || |  || | |||||||||||| | ||| || ||||||||||||     |||||||| |||  | | | |||||||  |||||| ||||  |||||||    
T  18117725 actcgtcgtgagaacattaggaagctgtctgttttcaaaatttgat-----ttaaataaatgggaacttgcaagagactctgagatgtggactttagaac 18117631  T
Q  274 aaaagaaaggtgatattttacctgcattaaaattaagctatgat 317  Q
    ||||| ||  |||||||||||||||| |||||||||||||||||    
T  18117630 aaaagcaaaatgatattttacctgcactaaaattaagctatgat 18117587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 78 - 316
Target Start/End: Complemental strand, 18125473 - 18125241
Alignment:
Q  78 tttgtgaaatgggcatttaaagacggagaagaaagaaaaatattcaaatctagtggagattggaaaagaaattgtgaagaaatgtgctggagttccgctg 177  Q
    ||||| ||||||||||| || || || |||||| ||||||||| |||||||||| ||||| |||||||| |||||||| |||||    || ||||| ||     
T  18125473 tttgtcaaatgggcattcaaggaaggcgaagaa-gaaaaatatccaaatctagtagagataggaaaagagattgtgaaaaaatgccaaggggttccacta 18125375  T
Q  178 gctgtcaaaacattaggaagttctctattctcaaaatttgatttaaattaaataagtggatattcgtaagagaccatgagatttggaacttagaacaaaa 277  Q
    ||||| | ||||||||||||||| ||||||||||||||||||||||||  |     |||||||| ||||||||   |||| | ||||| ||| ||||  |    
T  18125374 gctgttagaacattaggaagttccctattctcaaaatttgatttaaataca-----tggatatttgtaagagattctgagctgtggaatttaaaacagca 18125280  T
Q  278 gaaaggtgatattttacctgcattaaaattaagctatga 316  Q
     |||| |||||||||||||||| ||||||| ||||||||    
T  18125279 aaaagatgatattttacctgcactaaaattgagctatga 18125241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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