View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21212_high_4 (Length: 359)
Name: NF21212_high_4
Description: NF21212
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21212_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 208; Significance: 1e-114; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 10 - 217
Target Start/End: Complemental strand, 49511272 - 49511065
Alignment:
| Q |
10 |
catcatcagagaataccctattctggtaatcaccaacaaccacagcagaaccaatcggaacaccaaccgccgccagcgtagttggcacaggaggatgagg |
109 |
Q |
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| T |
49511272 |
catcatcagagaataccctattctggtaatcaccaacaaccacagcagaaccaatcggaacaccaaccgccgccagcgtagttggcacaggaggatgagg |
49511173 |
T |
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| Q |
110 |
tggtgaagacatgacagcaaaaccctcatcctgtagcctctgtccaataccaccaacaccaacaaccatttgagcaaactgttcatcaatccccaaaacc |
209 |
Q |
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| T |
49511172 |
tggtgaagacatgacagcaaaaccctcatcctgtagcctctgtccaataccaccaacaccaacaaccatttgagcaaactgttcatcaatccccaaaacc |
49511073 |
T |
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| Q |
210 |
ttttgatc |
217 |
Q |
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|||||||| |
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| T |
49511072 |
ttttgatc |
49511065 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 254 - 359
Target Start/End: Complemental strand, 49511031 - 49510926
Alignment:
| Q |
254 |
agccctaacaccaccggaaacaccatcttcaacatgcaccctgataggaggcaaattcgctaaagacggagacgaagaagtcgaaccaaaggacgaagaa |
353 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
49511031 |
agccctaacaccaccggaaacaccatcttcaacatgcaccctgataggaggcaaattcgctaaagacggagacgaagaagtcgagccaaaggacgaagaa |
49510932 |
T |
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| Q |
354 |
gtctcc |
359 |
Q |
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|||||| |
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| T |
49510931 |
gtctcc |
49510926 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 148 - 208
Target Start/End: Original strand, 47488195 - 47488255
Alignment:
| Q |
148 |
tctgtccaataccaccaacaccaacaaccatttgagcaaactgttcatcaatccccaaaac |
208 |
Q |
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| T |
47488195 |
tctgtccaataccaccaacaccaacaaccatttgagcaaactgttcatcaatcctcaaaac |
47488255 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 54; Significance: 6e-22; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 146 - 211
Target Start/End: Original strand, 45230420 - 45230485
Alignment:
| Q |
146 |
cctctgtccaataccaccaacaccaacaaccatttgagcaaactgttcatcaatccccaaaacctt |
211 |
Q |
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| T |
45230420 |
cctctgttcaataccactaacaccaacaaccatttgagcaaactgttcatcaatcctcaaaacctt |
45230485 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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