View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21212_low_4 (Length: 453)

Name: NF21212_low_4
Description: NF21212
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21212_low_4
NF21212_low_4
[»] chr6 (17 HSPs)
chr6 (132-435)||(2928167-2928455)
chr6 (132-294)||(2935672-2935839)
chr6 (132-253)||(2953019-2953140)
chr6 (16-128)||(2927989-2928102)
chr6 (132-308)||(2986801-2986982)
chr6 (16-98)||(3002878-3002960)
chr6 (16-77)||(2954967-2955028)
chr6 (19-84)||(2952838-2952903)
chr6 (16-76)||(2986612-2986672)
chr6 (156-258)||(2985775-2985878)
chr6 (22-83)||(2974890-2974951)
chr6 (150-210)||(2955323-2955383)
chr6 (33-98)||(2935506-2935571)
chr6 (19-72)||(2965404-2965457)
chr6 (27-74)||(2983751-2983798)
chr6 (193-235)||(2955394-2955436)
chr6 (150-191)||(5584139-5584180)
[»] scaffold0024 (4 HSPs)
scaffold0024 (132-308)||(43177-43358)
scaffold0024 (132-308)||(33875-34056)
scaffold0024 (19-98)||(34158-34237)
scaffold0024 (26-98)||(43462-43534)
[»] chr7 (3 HSPs)
chr7 (143-306)||(3340077-3340246)
chr7 (16-77)||(3339881-3339942)
chr7 (58-98)||(3346462-3346502)
[»] chr1 (1 HSPs)
chr1 (136-191)||(46581262-46581317)
[»] chr8 (1 HSPs)
chr8 (139-191)||(2071647-2071699)


Alignment Details
Target: chr6 (Bit Score: 238; Significance: 1e-131; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 132 - 435
Target Start/End: Original strand, 2928167 - 2928455
Alignment:
Q  132 tgaaaattgatttttcataattcaagttgtttggataatttagatcaaaattacttttgagtgtgaatttaccaaaactggtttgaatgattaaaaaaga 231  Q
    |||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2928167 tgaaaagtgatttttcataattcaagttgtttagataatttagatcaaaattacttttgagtgtgaatttaccaaaactggtttgaatgattaaaaaaga 2928266  T
Q  232 agaggcacgttaataaaataagagagtgcttgagtaaatggtaaattgattaccaagtcacatcaataaaatgttgagaccaggtttatcattttattct 331  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||    
T  2928267 agaggcacgttaataaaataagagagtgcttgagtaaatggtaaattgattaccaaatgacatcaataaaatgttgagaccaggtttatcattttattct 2928366  T
Q  332 caatagtttaggcttgatcatccaatagtagtggatattgggattgtttcgtatctttctcaatagcgtgttttgaggcgctcagaaaattcaaaaggtc 431  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||               |||||||||||||||||||||||||||||||||||||    
T  2928367 caatagtttaggcttgatcatccaatagtagtggatattgggattgtt---------------tagcgtgttttgaggcgctcagaaaattcaaaaggtc 2928451  T

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Target: chr6; HSP #2
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 132 - 294
Target Start/End: Original strand, 2935672 - 2935839
Alignment:
Q  132 tgaaaattgatttttcataattcaagttgtttggataatttagatcaaaattacttttgagtgtgaatttaccaaaactggtttgaatgattaaaaaaga 231  Q
    |||||| ||||||||||||||||| |||||||||||||||||||||||||||  |||||| |||||||||| ||||||  ||||||||||||||||||||    
T  2935672 tgaaaagtgatttttcataattcatgttgtttggataatttagatcaaaattgtttttgaatgtgaatttatcaaaacgcgtttgaatgattaaaaaaga 2935771  T
Q  232 agaggcacgttaataaaataagagagtg-----cttgagtaaatggtaaattgattaccaagtcacat 294  Q
    ||||| |||| |||||||||||| | ||     ||||| ||||||||||||||||||| | |||||||    
T  2935772 agaggaacgtcaataaaataagacaatgaaacacttgactaaatggtaaattgattactaggtcacat 2935839  T

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Target: chr6; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 132 - 253
Target Start/End: Original strand, 2953019 - 2953140
Alignment:
Q  132 tgaaaattgatttttcataattcaagttgtttggataatttagatcaaaattacttttgagtgtgaatttaccaaaactggtttgaatgattaaaaaaga 231  Q
    |||||| |||||||||||||||||||||||||||| |||||||||||||||||||||| || ||||||||| ||||||| ||||||||||||||||||||    
T  2953019 tgaaaagtgatttttcataattcaagttgtttggagaatttagatcaaaattacttttaagagtgaatttatcaaaactagtttgaatgattaaaaaaga 2953118  T
Q  232 agaggcacgttaataaaataag 253  Q
    ||||| || |  ||||||||||    
T  2953119 agaggaacatccataaaataag 2953140  T

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Target: chr6; HSP #4
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 16 - 128
Target Start/End: Original strand, 2927989 - 2928102
Alignment:
Q  16 atgggtctgatagtgtggttggcaaaa--tctaggggtgcaggtagaaactcctaactaatgtcacgtctcgtgtgtgtttggttataaaaactgttttt 113  Q
    ||||||||||||| |||||||||||||  ||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| || ||||    
T  2927989 atgggtctgatagcgtggttggcaaaaaatcttggggtgcaggtagaaactcctgactaatgtcacgtctcgtgtgtgtttggttataaaaattg-tttt 2928087  T
Q  114 tgaatgaattgattt 128  Q
    |||| ||||||||||    
T  2928088 tgaaagaattgattt 2928102  T

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Target: chr6; HSP #5
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 132 - 308
Target Start/End: Original strand, 2986801 - 2986982
Alignment:
Q  132 tgaaaattgatttttcataattcaagttgtttggataatttagatcaaaattacttttgagtgtgaatttaccaaaactggtttgaatgattaaaaaaga 231  Q
    |||||| |||||| |||| ||||||||||||||||||||||| |||||||||| |||||| |||||||| || |||  | ||||  || ||| |||||||    
T  2986801 tgaaaagtgatttatcattattcaagttgtttggataatttaaatcaaaattatttttgaatgtgaattgacgaaatttagtttatataattgaaaaaga 2986900  T
Q  232 agaggcacgttaataaaataagagagtg-----cttgagtaaatggtaaattgattaccaagtcacatcaataaaatgttga 308  Q
    ||||| || |  ||||||||||||||||     ||||||||||||||||||| |||||    ||||||||||||||||||||    
T  2986901 agaggaacatcgataaaataagagagtgcaacacttgagtaaatggtaaatttattactggatcacatcaataaaatgttga 2986982  T

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Target: chr6; HSP #6
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 16 - 98
Target Start/End: Complemental strand, 3002960 - 3002878
Alignment:
Q  16 atgggtctgatagtgtggttggcaaaatctaggggtgcaggtagaaactcctaactaatgtcacgtctcgtgtgtgtttggtt 98  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||  |||||| ||| ||||||||    
T  3002960 atgggtctgatagtgtggttggcaaaatctaggggtgcaggtagaaacttcaaactaatgtcgtgtctcgcgtgcgtttggtt 3002878  T

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Target: chr6; HSP #7
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 16 - 77
Target Start/End: Original strand, 2954967 - 2955028
Alignment:
Q  16 atgggtctgatagtgtggttggcaaaatctaggggtgcaggtagaaactcctaactaatgtc 77  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  2954967 atgggtctgatagtgtggttggcaaaatctagggttgcaggtagaaactcctaactaatgtc 2955028  T

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Target: chr6; HSP #8
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 19 - 84
Target Start/End: Original strand, 2952838 - 2952903
Alignment:
Q  19 ggtctgatagtgtggttggcaaaatctaggggtgcaggtagaaactcctaactaatgtcacgtctc 84  Q
    ||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||| ||||||    
T  2952838 ggtctgatagtgttgttggcaaaatctaggggtgcaggtagaaattcctaactaatgtcgcgtctc 2952903  T

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Target: chr6; HSP #9
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 16 - 76
Target Start/End: Original strand, 2986612 - 2986672
Alignment:
Q  16 atgggtctgatagtgtggttggcaaaatctaggggtgcaggtagaaactcctaactaatgt 76  Q
    |||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||    
T  2986612 atgggtctgatagtgtggttggcaaaatctaggggtgcaactagaaactcctaactaatgt 2986672  T

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Target: chr6; HSP #10
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 156 - 258
Target Start/End: Original strand, 2985775 - 2985878
Alignment:
Q  156 agttgtttggataatttagatcaaaattacttttgagtgtgaatttaccaaaactggtttgaatgatt-aaaaaagaagaggcacgttaataaaataaga 254  Q
    |||||||||| ||||||| ||| |||||||| ||||||||| ||||||||||||| |||||||||||| |||||||||||||  | | ||| ||||||||    
T  2985775 agttgtttgggtaatttaaatcgaaattactcttgagtgtgcatttaccaaaactagtttgaatgattaaaaaaagaagaggagcatcaatcaaataaga 2985874  T
Q  255 gagt 258  Q
    ||||    
T  2985875 gagt 2985878  T

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Target: chr6; HSP #11
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 22 - 83
Target Start/End: Original strand, 2974890 - 2974951
Alignment:
Q  22 ctgatagtgtggttggcaaaatctaggggtgcaggtagaaactcctaactaatgtcacgtct 83  Q
    |||||||||| ||||| |||||||||||||||||||||||||||||||||||||||| ||||    
T  2974890 ctgatagtgttgttggaaaaatctaggggtgcaggtagaaactcctaactaatgtcatgtct 2974951  T

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Target: chr6; HSP #12
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 150 - 210
Target Start/End: Original strand, 2955323 - 2955383
Alignment:
Q  150 aattcaagttgtttggataatttagatcaaaattacttttgagtgtgaatttaccaaaact 210  Q
    |||||||||||||||||||||||||||||||||||||| ||| ||||||||| ||||||||    
T  2955323 aattcaagttgtttggataatttagatcaaaattacttctgaatgtgaattttccaaaact 2955383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 33 - 98
Target Start/End: Original strand, 2935506 - 2935571
Alignment:
Q  33 gttggcaaaatctaggggtgcaggtagaaactcctaactaatgtcacgtctcgtgtgtgtttggtt 98  Q
    ||||||||||||||||||||||||||||||||| |||||||||||| ||||||  | |||||||||    
T  2935506 gttggcaaaatctaggggtgcaggtagaaactcataactaatgtcatgtctcgcatctgtttggtt 2935571  T

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Target: chr6; HSP #14
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 19 - 72
Target Start/End: Original strand, 2965404 - 2965457
Alignment:
Q  19 ggtctgatagtgtggttggcaaaatctaggggtgcaggtagaaactcctaacta 72  Q
    ||||||||||||| ||||||||||||||||| | ||||||||||||||||||||    
T  2965404 ggtctgatagtgttgttggcaaaatctagggtttcaggtagaaactcctaacta 2965457  T

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Target: chr6; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 27 - 74
Target Start/End: Original strand, 2983751 - 2983798
Alignment:
Q  27 agtgtggttggcaaaatctaggggtgcaggtagaaactcctaactaat 74  Q
    ||||| ||| |||||||||||||||||||||| |||||||||||||||    
T  2983751 agtgttgttcgcaaaatctaggggtgcaggtaaaaactcctaactaat 2983798  T

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Target: chr6; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 193 - 235
Target Start/End: Original strand, 2955394 - 2955436
Alignment:
Q  193 tgtgaatttaccaaaactggtttgaatgattaaaaaagaagag 235  Q
    |||||||||||||||||  ||||||||||||||||||||||||    
T  2955394 tgtgaatttaccaaaaccagtttgaatgattaaaaaagaagag 2955436  T

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Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 150 - 191
Target Start/End: Original strand, 5584139 - 5584180
Alignment:
Q  150 aattcaagttgtttggataatttagatcaaaattacttttga 191  Q
    |||||||||||||||||||||||| ||||||||  |||||||    
T  5584139 aattcaagttgtttggataatttaaatcaaaatagcttttga 5584180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 98; Significance: 4e-48; HSPs: 4)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 132 - 308
Target Start/End: Complemental strand, 43358 - 43177
Alignment:
Q  132 tgaaaattgatttttcataattcaagttgtttggataatttagatcaaaattacttttgagtgtgaatttaccaaaactggtttgaatgattaaaaaaga 231  Q
    |||||| |||||||||||||||||||||||||||||||||| |||| |||| |||||| |||||||||||| ||||||| |||||||||||| |||||||    
T  43358 tgaaaaatgatttttcataattcaagttgtttggataattttgatcgaaatgacttttaagtgtgaatttatcaaaactagtttgaatgattgaaaaaga 43259  T
Q  232 agaggcacgttaataaaataagagagtg-----cttgagtaaatggtaaattgattaccaagtcacatcaataaaatgttga 308  Q
    ||||| || | |||||||||||||| ||     |||||||||||||| ||||||| | || |||||||||||||||||||||    
T  43258 agaggaacatcaataaaataagagactgcaacacttgagtaaatggtgaattgatcaacaggtcacatcaataaaatgttga 43177  T

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Target: scaffold0024; HSP #2
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 132 - 308
Target Start/End: Complemental strand, 34056 - 33875
Alignment:
Q  132 tgaaaattgatttttcataattcaagttgtttggataatttagatcaaaattacttttgagtgtgaatttaccaaaactggtttgaatgattaa--aaaa 229  Q
    |||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||| ||| |||||||||||||||  ||||    
T  34056 tgaaaagtgatttttcataattcaagttatttggataatttagatcaaaattacttttgagtgtgactttaccataacaggtttgaatgattaaaaaaaa 33957  T
Q  230 gaagaggcacgttaataaaataagag---agtgcttgagtaaatggtaaattgattaccaagtcacatcaataaaatgttga 308  Q
    ||||||| || ||||||||| |||||   |   ||| || ||||||| |||||||||| |||| ||||||||||||||||||    
T  33956 gaagaggaacattaataaaaaaagagtgcaaaacttcaggaaatggtgaattgattacgaagttacatcaataaaatgttga 33875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 19 - 98
Target Start/End: Complemental strand, 34237 - 34158
Alignment:
Q  19 ggtctgatagtgtggttggcaaaatctaggggtgcaggtagaaactcctaactaatgtcacgtctcgtgtgtgtttggtt 98  Q
    ||||||||||||| |||||||||||||| ||||||| |||||||||||||| |||||||  |||||   |||||||||||    
T  34237 ggtctgatagtgttgttggcaaaatctacgggtgcaagtagaaactcctaagtaatgtcgtgtctcacatgtgtttggtt 34158  T

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Target: scaffold0024; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 26 - 98
Target Start/End: Complemental strand, 43534 - 43462
Alignment:
Q  26 tagtgtggttggcaaaatctaggggtgcaggtagaaactcctaactaatgtcacgtctcgtgtgtgtttggtt 98  Q
    ||||||| |||||||||| |||||||||| |||||||||| |||||||||||  ||||||  ||||| |||||    
T  43534 tagtgtgattggcaaaatataggggtgcatgtagaaactcttaactaatgtcgtgtctcgcatgtgtatggtt 43462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 98; Significance: 4e-48; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 143 - 306
Target Start/End: Original strand, 3340077 - 3340246
Alignment:
Q  143 ttttcataattcaagttgtttggataatttagatcaaaattacttttgagtgtgaatttaccaaaactggtttgaatgatt-aaaaaagaagaggcacgt 241  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||| ||||||| ||||||||| ||| ||||    
T  3340077 ttttcataattcaagttgtttggataatttagattaaaattacttttgagtgtgaatttatcaaaactggttttaatgattaaaaaaagaaaaggaacgt 3340176  T
Q  242 taataaaataagagagtg-----cttgagtaaatggtaaattgattaccaagtcacatcaataaaatgtt 306  Q
     |||||||||||||||||     ||||| |||||| |||||||||||||| ||| |||||||||| ||||    
T  3340177 caataaaataagagagtgcaacacttgactaaatgataaattgattaccaggtcgcatcaataaattgtt 3340246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 16 - 77
Target Start/End: Original strand, 3339881 - 3339942
Alignment:
Q  16 atgggtctgatagtgtggttggcaaaatctaggggtgcaggtagaaactcctaactaatgtc 77  Q
    |||||||||||| | |||||||||||||||||||||||| ||||||||||||||||||||||    
T  3339881 atgggtctgataatatggttggcaaaatctaggggtgcatgtagaaactcctaactaatgtc 3339942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 58 - 98
Target Start/End: Original strand, 3346462 - 3346502
Alignment:
Q  58 agaaactcctaactaatgtcacgtctcgtgtgtgtttggtt 98  Q
    |||||||||||||||||||| |||||||  |||||||||||    
T  3346462 agaaactcctaactaatgtcgcgtctcgcatgtgtttggtt 3346502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 136 - 191
Target Start/End: Original strand, 46581262 - 46581317
Alignment:
Q  136 aattgatttttcataattcaagttgtttggataatttagatcaaaattacttttga 191  Q
    |||||||||||   |||||||||||||||||||||||  |||||||||| ||||||    
T  46581262 aattgatttttaccaattcaagttgtttggataatttgaatcaaaattatttttga 46581317  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 139 - 191
Target Start/End: Original strand, 2071647 - 2071699
Alignment:
Q  139 tgatttttcataattcaagttgtttggataatttagatcaaaattacttttga 191  Q
    ||||||||  ||||||||||||||||||||||||  ||||||||  |||||||    
T  2071647 tgatttttactaattcaagttgtttggataatttgaatcaaaatagcttttga 2071699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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