View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21212_low_5 (Length: 431)
Name: NF21212_low_5
Description: NF21212
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21212_low_5 |
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| [»] chr4 (1 HSPs) |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 398; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 18 - 431
Target Start/End: Complemental strand, 42467474 - 42467062
Alignment:
| Q |
18 |
acgatgtgatttgattagagatatatgtaatgaatttgataatatcattgcatagtgattaatttaatctctcgattacattgagtttacatttcacttt |
117 |
Q |
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| T |
42467474 |
acgatgtgatttgattagagatatatgtaaagaatttgataatatcattgcatagtgattaatt-aatctctcgattacattgagtttacatttcacttt |
42467376 |
T |
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| Q |
118 |
cagatttgtaaaactaacaaaaagtctctttgattgtggaaaattaatcacaacagataaaaatatataaccgtggtgtatttaaacaagtaaattaaaa |
217 |
Q |
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| T |
42467375 |
cagatttgtaaaactaacaaaaagtctctttgattgtggaaaattaatcacaacagataaaaatatataaccgtggtgtatttaaacaagtaaattaaaa |
42467276 |
T |
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| Q |
218 |
ggatgagcactgatggcaacatacttcaatgaaaattgacatgtgtggaataggttattccagcaccccagttggaaggagcaacattccaagctattat |
317 |
Q |
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| T |
42467275 |
ggatgagcactgatggcaacatacttcaatgaaaattgacatgtgtggaataggttagtccagcaccccagttggaaggagcaacattccaagctattat |
42467176 |
T |
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| Q |
318 |
agtttctttggttgtgtaagaagtaatcttgaaagaaagagtttggccactaagtgttgcaaatgcttggtaagaagcaccccaattgtggctcatgcta |
417 |
Q |
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| T |
42467175 |
agtttctttggttgtgtaagaagtaatcttgaaagaaagagtttggccactaagtgttgcaaatgcttggtaagaagcaccccaattgtggctcatgcta |
42467076 |
T |
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| Q |
418 |
atccatcctgttct |
431 |
Q |
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| T |
42467075 |
atccatcctgttct |
42467062 |
T |
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Back To:
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Target: chr5 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 289 - 431
Target Start/End: Original strand, 3183511 - 3183653
Alignment:
| Q |
289 |
ttggaaggagcaacattccaagctattatagtttctttggttgtgtaagaagtaatcttgaaagaaagagtttggccactaagtgttgcaaatgcttggt |
388 |
Q |
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| T |
3183511 |
ttggaaggagcaacattccatgcaataatagtctccttagtggtgtatgaagtaagcctgaaagaaagagcttgaccacctagtgttgcaaatgcttggt |
3183610 |
T |
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| Q |
389 |
aagaagcaccccaattgtggctcatgctaatccatcctgttct |
431 |
Q |
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| T |
3183611 |
aggaagcaccccagttatggctcatcttaatccatcctgttct |
3183653 |
T |
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