View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21213_high_12 (Length: 571)
Name: NF21213_high_12
Description: NF21213
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21213_high_12 |
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Alignment Details
Target: chr2 (Bit Score: 305; Significance: 1e-171; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 94 - 409
Target Start/End: Complemental strand, 6018936 - 6018620
Alignment:
| Q |
94 |
ttggtaccagattggacatttgagttctcttcccattttttcaagatcccccatttctgatttcgattaattgaatcacaatcacaatgaatagtgaaag |
193 |
Q |
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| T |
6018936 |
ttggtaccagattggacatttgagttctcttcccattttttcaagatcccccatttctgatttcgattaattgaatcacaatcacaatgaatagtgaaag |
6018837 |
T |
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| Q |
194 |
aacagagaagaaagggttttaatgaagttttggattggatttgaatttgaaaaccgcgctttagctatctcacgcgccaataaattcgcctttggcggtt |
293 |
Q |
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| T |
6018836 |
aacagagaagaaagggttttaatgaagttttggattggatttgaatttgaaaaccgcgctttagctgtctcacgcgccaataaattcgcctttggcggtt |
6018737 |
T |
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| Q |
294 |
caaattttgggaggattacacgatacgcttcgtccaaaatactgtaaactatttatcaattaataa-aaaatacatttatgttaattaaattacttttaa |
392 |
Q |
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| T |
6018736 |
caaattttgggaggattacacgatacgcttcgtccaaaatactgtaaactatttatcaattaataaaaaaatacatttatgttaattaaattacttttaa |
6018637 |
T |
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| Q |
393 |
gatgtgtacaaggttct |
409 |
Q |
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| T |
6018636 |
gatgtgtacaaggttct |
6018620 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 434 - 511
Target Start/End: Complemental strand, 6018564 - 6018487
Alignment:
| Q |
434 |
gtgtagacggttcatttctgaaaattattattttagtaagtcatttctttatggattaattgatcctttggtcccgtt |
511 |
Q |
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| T |
6018564 |
gtgtagaaggttcatttctgaaaattattattttagtgagtcatttttttatggattaattgatcatttggtcccgtt |
6018487 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 433 - 470
Target Start/End: Complemental strand, 6018600 - 6018563
Alignment:
| Q |
433 |
tgtgtagacggttcatttctgaaaattattattttagt |
470 |
Q |
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| T |
6018600 |
tgtgtagaaggttcatttctgaaaattattattttagt |
6018563 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 9e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 94 - 149
Target Start/End: Complemental strand, 20944763 - 20944708
Alignment:
| Q |
94 |
ttggtaccagattggacatttgagttctcttcccattttttcaagatcccccattt |
149 |
Q |
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| T |
20944763 |
ttggtaccagattggacatttgagttctctgcccatgttttcaagatccaccattt |
20944708 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 98 - 130
Target Start/End: Original strand, 38009798 - 38009830
Alignment:
| Q |
98 |
taccagattggacatttgagttctcttcccatt |
130 |
Q |
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| T |
38009798 |
taccagattggacatttgagttctctgcccatt |
38009830 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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