View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21213_high_13 (Length: 555)
Name: NF21213_high_13
Description: NF21213
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21213_high_13 |
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| [»] scaffold0262 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 465; Significance: 0; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 465; E-Value: 0
Query Start/End: Original strand, 11 - 537
Target Start/End: Original strand, 33428270 - 33428800
Alignment:
| Q |
11 |
catcatcactgttctagcagaaagtgcccctgctccttctcttccaccttcttctgatgctcattctgttgtttcatctgtgtttggagttgtcatggca |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33428270 |
catcatcactgttctagcagaaagtgcccctgctccttctcttccaccttcttctgatgctcattctgttgtttcatctgtgtttggagttgtcatggca |
33428369 |
T |
|
| Q |
111 |
accatggttgcagttgcagtcatctttgcatgacttaggaagctttatattgtttttaatacaagagtttgtgttaacctcttggcaannnnnnnaatta |
210 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
33428370 |
accatggttgcaattgcagtcatctttgcatgacttaggaagctttatattgtttttaatacaagagtttgtgttaacctcttggcaatttttttaatta |
33428469 |
T |
|
| Q |
211 |
atgatgtttctttattttaatgatattgtaattagatcttcaattttatatttccttatgctttaacttgttcttgannnnnnnnatttgaaatttttgc |
310 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
33428470 |
atgatgtttctttattttaatgatattgtaattagatcttcaattttatatttccttatgctttaacttgttcttgattttttttatttgaaatttttgc |
33428569 |
T |
|
| Q |
311 |
atctgtcacaagaattgtacttcaaaaaggtccttgacaggtttggaatgttaaattttaaacttgtagcaacac----atctcagcaattcaagttagg |
406 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
33428570 |
atctgtcacaagaattgtacttcaaaaaggtccttgacaggtttggaatgttaaattttaaacttgtagcaacacttatatctcagcaattcaagttagg |
33428669 |
T |
|
| Q |
407 |
tgtaaacaagtatgcaatattgagaccttatagccgtaatttctaagattgtttatgaatcaagagaatgaaataattcaagagaacaactataaactta |
506 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33428670 |
tgtaaacaagtatgcaatattgagaccttatagccgtaatttctaagattgtttatgaatcaagagaatgaaataattcaagagaacaactataaactta |
33428769 |
T |
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| Q |
507 |
tcattattctgattgggaactttcacattat |
537 |
Q |
| |
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| T |
33428770 |
tcattattctgattgggaactttcacattat |
33428800 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 13 - 198
Target Start/End: Complemental strand, 33416264 - 33416075
Alignment:
| Q |
13 |
tcatcactgttctagcagaaagtgcccctgctccttctcttccaccttcttctgatgctcattctgttgtttcatctgtgtttggagttgtcatggcaac |
112 |
Q |
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|||||||||||||||| ||| |||| ||||||||||||| |||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||| |
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| T |
33416264 |
tcatcactgttctagccgaaggtgcacctgctccttctccaccaccttcttctgatgctcactctgttgtttcatctctgtttggagttgtcatggcaat |
33416165 |
T |
|
| Q |
113 |
catggttgcagttgcagtcatctttgcat----gacttaggaagctttatattgtttttaatacaagagtttgtgttaacctcttggcaa |
198 |
Q |
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|||||||||| |||||||||||||||||| ||||||||||| ||||||||||| |||||||| ||||||||||||||||||||||| |
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| T |
33416164 |
catggttgcaattgcagtcatctttgcatgagagacttaggaagttttatattgttattaatacagaagtttgtgttaacctcttggcaa |
33416075 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 13 - 198
Target Start/End: Complemental strand, 33410415 - 33410226
Alignment:
| Q |
13 |
tcatcactgttctagcagaaagtgcccctgctccttctcttccaccttcttctgatgctcattctgttgtttcatctgtgtttggagttgtcatggcaac |
112 |
Q |
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|||||||||||||||| ||| |||| ||||||||||||| |||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||| |
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| T |
33410415 |
tcatcactgttctagccgaaggtgcacctgctccttctccaccaccttcttctgatgctcactctgttgtttcatctctgtttggagttgtcatggcaat |
33410316 |
T |
|
| Q |
113 |
catggttgcagttgcagtcatctttgcat----gacttaggaagctttatattgtttttaatacaagagtttgtgttaacctcttggcaa |
198 |
Q |
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|||||||||| |||||||||||||||||| ||||||||||||||||||||||| |||||||||| |||||||||| || ||||||| |
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| T |
33410315 |
catggttgcaattgcagtcatctttgcatgagagacttaggaagctttatattgttattaatacaagtatttgtgttaatcttttggcaa |
33410226 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 13 - 198
Target Start/End: Complemental strand, 33424317 - 33424128
Alignment:
| Q |
13 |
tcatcactgttctagcagaaagtgcccctgctccttctcttccaccttcttctgatgctcattctgttgtttcatctgtgtttggagttgtcatggcaac |
112 |
Q |
| |
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|||||||||||||||| ||| |||| ||||||||||||| |||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||| |
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| T |
33424317 |
tcatcactgttctagccgaaggtgcacctgctccttctccaccaccttcttctgatgctcactctgttgtttcatctctgtttggagttgtcatggcaat |
33424218 |
T |
|
| Q |
113 |
catggttgcagttgcagtcatctttgcat----gacttaggaagctttatattgtttttaatacaagagtttgtgttaacctcttggcaa |
198 |
Q |
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|||||||||| |||||||||||||||||| ||||||||||||||||||||||| |||||||||| |||||||||| || ||||||| |
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| T |
33424217 |
catggttgcaattgcagtcatctttgcatgagagacttaggaagctttatattgttattaatacaagtatttgtgttaatcttttggcaa |
33424128 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 13 - 108
Target Start/End: Complemental strand, 33436469 - 33436374
Alignment:
| Q |
13 |
tcatcactgttctagcagaaagtgcccctgctccttctcttccaccttcttctgatgctcattctgttgtttcatctgtgtttggagttgtcatgg |
108 |
Q |
| |
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|||||||||||||||||||| | || ||||||||||| | ||| || |||||| ||||||| ||| |||| |||||| |||||||||||||||||| |
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| T |
33436469 |
tcatcactgttctagcagaaggcgcacctgctccttcccctcctccatcttctaatgctcactctattgtatcatctatgtttggagttgtcatgg |
33436374 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 439 - 470
Target Start/End: Complemental strand, 33415067 - 33415036
Alignment:
| Q |
439 |
gccgtaatttctaagattgtttatgaatcaag |
470 |
Q |
| |
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|||||||||||||||||||||||||||||||| |
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| T |
33415067 |
gccgtaatttctaagattgtttatgaatcaag |
33415036 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 83; Significance: 5e-39; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 296 - 419
Target Start/End: Original strand, 17790880 - 17791007
Alignment:
| Q |
296 |
atttgaaatttttgcatctgtcacaagaattgtacttcaaaaaggtccttgacaggtttggaatgttaaattttaaacttgtagcaac----acatctca |
391 |
Q |
| |
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|||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||| | |||||| |
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| T |
17790880 |
atttgaaaattttgcatctgtcacaagagttgtacttcaaaaaggtccttgacaggtttggaatgttaaattcgaaacttgtaacaacgcttatatctca |
17790979 |
T |
|
| Q |
392 |
gcaattcaagttaggtgtaaacaagtat |
419 |
Q |
| |
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|||||| ||||||||||||||||||||| |
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| T |
17790980 |
gcaattgaagttaggtgtaaacaagtat |
17791007 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 48; Significance: 4e-18; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 331 - 423
Target Start/End: Original strand, 33416432 - 33416528
Alignment:
| Q |
331 |
ttcaaaaaggtccttgacaggtttggaatgttaaattttaaacttgtagcaacac----atctcagcaattcaagttaggtgtaaacaagtatgcaa |
423 |
Q |
| |
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||||||||||||||||||||||||| |||||||||| ||||||||| |||||| || ||||||||| ||||||| ||||||||||||||||| |
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| T |
33416432 |
ttcaaaaaggtccttgacaggtttgtaatgttaaatacaaaacttgtaacaacacttatatgtcagcaattgaagttagttgtaaacaagtatgcaa |
33416528 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 319 - 419
Target Start/End: Original strand, 27529475 - 27529581
Alignment:
| Q |
319 |
caagaattgtacttcaaaaaggtccttgacaggtttggaatgttaaattttaaacttgtagcaac----acatctcagcaattcaagt--taggtgtaaa |
412 |
Q |
| |
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||||| ||| ||||||||||||||||||||||||||| ||||||||||| ||||||||| |||| | |||||||||||| |||| |||||||||| |
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| T |
27529475 |
caagagttgcacttcaaaaaggtccttgacaggtttgaaatgttaaattcaaaacttgtaacaacgcttatatctcagcaattgaagttataggtgtaaa |
27529574 |
T |
|
| Q |
413 |
caagtat |
419 |
Q |
| |
|
||||||| |
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|
| T |
27529575 |
caagtat |
27529581 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0262 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold0262
Description:
Target: scaffold0262; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 13 - 108
Target Start/End: Original strand, 5308 - 5403
Alignment:
| Q |
13 |
tcatcactgttctagcagaaagtgcccctgctccttctcttccaccttcttctgatgctcattctgttgtttcatctgtgtttggagttgtcatgg |
108 |
Q |
| |
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|||||||||||||||||||| | || |||||||||| ||| || |||||| ||||||| ||| |||| |||||| |||||||||| ||||||| |
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| T |
5308 |
tcatcactgttctagcagaaggcgcatctgctccttccactcctccatcttctaatgctcactctattgtatcatctatgtttggagtcgtcatgg |
5403 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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