View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21213_high_14 (Length: 527)
Name: NF21213_high_14
Description: NF21213
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21213_high_14 |
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Alignment Details
Target: chr8 (Bit Score: 411; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 411; E-Value: 0
Query Start/End: Original strand, 5 - 519
Target Start/End: Original strand, 17270237 - 17270751
Alignment:
| Q |
5 |
ctctgtacgtgagagagaattggaaggaaaaagataagaagaaaaatgtggtttagctcttttataatcttttgataaaattattaccacaatgccctcc |
104 |
Q |
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| T |
17270237 |
ctctgtacgtgagagagaattggaaggaaaaagataagaagaaaaatgtggtttagctcttttataatcttttgataaaattattaccacgatgccctcc |
17270336 |
T |
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| Q |
105 |
tcttaagatgttgttcagtcacagttaaaaggacactgcattctatctagaattaagcggaatattacaaattcaaaataagttaacataattcccaatg |
204 |
Q |
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| T |
17270337 |
tcttaagatgtttttcagtcacagttaaaaggacactgcattctatccggaattaagcgggatattacgaattcaaaataagttaacataattcccaatg |
17270436 |
T |
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| Q |
205 |
aatagtaaatcaattaattcatatatactattcaacaatgataactaaaacttagatccaaatttctttacgatgttgcaatgatgtgaacatagaagaa |
304 |
Q |
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| T |
17270437 |
aataataagtcaattaattcatatatactattcaacaatgagatctaaaacttagatccaaattttgttacgatgtttcaatgttgtgcacatagaagaa |
17270536 |
T |
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| Q |
305 |
attcaatttgacttctcattaggtttgacctagtgtagcctttgtgtaaacgataaatttatctttgatggccttttaaaacaatgttattgaaatgtga |
404 |
Q |
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| T |
17270537 |
attcaatttgacttttcattagatttgatctagtgtagcctttgtgtaaacgagaaatttatctttgatgcccttttaaaacatttttattgaaatgtga |
17270636 |
T |
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| Q |
405 |
aattcaatcaaatcgacgaaataccaaatgcattgagaaaaacatacatcaatcatatacatttggtacttcgtcgactgattgaaaattcacctccaac |
504 |
Q |
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| T |
17270637 |
aattcaatcaaatcgacgaaataccaaatgcattgagaaaaatatacattaatcatatacatttgatacttcgtcgactgattgaaaattcacctccaac |
17270736 |
T |
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| Q |
505 |
aaaagactgatgatg |
519 |
Q |
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| T |
17270737 |
aaatgactgatgatg |
17270751 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 8 - 357
Target Start/End: Original strand, 17276384 - 17276733
Alignment:
| Q |
8 |
tgtacgtgagagagaattggaaggaaaaagataagaagaaaaatgtggtttagctcttttataatcttttgataaaattattaccacaatgccctcctct |
107 |
Q |
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| T |
17276384 |
tgtacgtgagagagaattggaaggaaaaagataagaagaaaaatgtggtttagctcttttataatcttttgataaaattattaccacaatgccctcctct |
17276483 |
T |
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| Q |
108 |
taagatgttgttcagtcacagttaaaaggacactgcattctatctagaattaagcggaatattacaaattcaaaataagttaacataattcccaatgaat |
207 |
Q |
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| T |
17276484 |
taagatgttgttcagtcacagttaaaaggacactgcattctatccggaattaagcgggatattacgaattcaaaataagttaacataattcccaatgaat |
17276583 |
T |
|
| Q |
208 |
agtaaatcaattaattcatatatactattcaacaatgataactaaaacttagatccaaatttctttacgatgttgcaatgatgtgaacatagaagaaatt |
307 |
Q |
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| T |
17276584 |
agtaagtcaataaattcatatatactattcaacaatgataactaaaacttagatccaaatttcgttacgatgttgcaatgatgtgaacatagaagaaatt |
17276683 |
T |
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| Q |
308 |
caatttgacttctcattaggtttgacctagtgtagcctttgtgtaaacga |
357 |
Q |
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| T |
17276684 |
tgatttgacttctcattaggtttgacctagtgtagcctttgtgtaaacga |
17276733 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 325 - 519
Target Start/End: Original strand, 17276733 - 17276927
Alignment:
| Q |
325 |
aggtttgacctagtgtagcctttgtgtaaacgataaatttatctttgatggccttttaaaacaatgttattgaaatgtgaaattcaatcaaatcgacgaa |
424 |
Q |
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| T |
17276733 |
aggtttgacctagtgtagcctttgtgtaaacgagaaatttatctttgatggccttttaaaacattgttattgaaatgtgaaattcaatcaaatcgacgaa |
17276832 |
T |
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| Q |
425 |
ataccaaatgcattgagaaaaacatacatcaatcatatacatttggtacttcgtcgactgattgaaaattcacctccaacaaaagactgatgatg |
519 |
Q |
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| T |
17276833 |
ataccaaatgcattgagaaaaatatacatcaatcatatacatttggtacttcgtcgactgattgaaaattcacctccaacaaatgactgatgatg |
17276927 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 159 - 197
Target Start/End: Complemental strand, 17269760 - 17269722
Alignment:
| Q |
159 |
aagcggaatattacaaattcaaaataagttaacataatt |
197 |
Q |
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| T |
17269760 |
aagcgggatattacaaattcaaaacaagttaacataatt |
17269722 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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