View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21213_high_2 (Length: 750)

Name: NF21213_high_2
Description: NF21213
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21213_high_2
NF21213_high_2
[»] chr3 (1 HSPs)
chr3 (507-735)||(10316553-10316781)
[»] chr7 (3 HSPs)
chr7 (507-735)||(4486896-4487124)
chr7 (321-363)||(2269163-2269205)
chr7 (205-250)||(2269050-2269095)
[»] chr5 (4 HSPs)
chr5 (507-735)||(19022326-19022549)
chr5 (511-735)||(22066219-22066427)
chr5 (321-363)||(19022705-19022747)
chr5 (321-363)||(22066581-22066623)
[»] scaffold0131 (5 HSPs)
scaffold0131 (645-735)||(14100-14190)
scaffold0131 (503-598)||(13664-13759)
scaffold0131 (196-250)||(13401-13455)
scaffold0131 (20-67)||(13310-13357)
scaffold0131 (321-363)||(13481-13523)
[»] chr1 (1 HSPs)
chr1 (205-250)||(9392077-9392122)


Alignment Details
Target: chr3 (Bit Score: 201; Significance: 1e-109; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 507 - 735
Target Start/End: Complemental strand, 10316781 - 10316553
Alignment:
Q  507 cttgatgtgcagtgtggttttttctttgttgcgcgggggctgtcataggtccagcaggttgtggggtgatcaataggcgtaattacggtggctgtagttt 606  Q
    ||||||||||| ||  ||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10316781 cttgatgtgcaatgcagttttttctttgttgcgtgagggctgtcataggtccagcaggttgtggggtgatcaataggcgtaattacggtggctgtagttt 10316682  T
Q  607 gatttattttttgggtctatgctacttctgtgttcagaaacaaacaatagaaataaaaatagatgtaagatattcatggatgtatggctatttgtattgc 706  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||    
T  10316681 gatttattttttgggtctatgctacttctgtgttcagaaacaaacaatagaaataaaaatagatgtaaaatattcatggatgtatggctattagtattgc 10316582  T
Q  707 taagagttctatgtctttaggcaatatgt 735  Q
    |||||||||||||||||||||||||||||    
T  10316581 taagagttctatgtctttaggcaatatgt 10316553  T

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Target: chr7 (Bit Score: 169; Significance: 3e-90; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 169; E-Value: 3e-90
Query Start/End: Original strand, 507 - 735
Target Start/End: Complemental strand, 4487124 - 4486896
Alignment:
Q  507 cttgatgtgcagtgtggttttttctttgttgcgcgggggctgtcataggtccagcaggttgtggggtgatcaataggcgtaattacggtggctgtagttt 606  Q
    ||||||||| ||||  ||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||  |||||||| |||    
T  4487124 cttgatgtgaagtgcagttttttctttgttgcgtgggggctgtcataggtccagcaggttgttgggtgatcaataggcgtaattacaatggctgtatttt 4487025  T
Q  607 gatttattttttgggtctatgctacttctgtgttcagaaacaaacaatagaaataaaaatagatgtaagatattcatggatgtatggctatttgtattgc 706  Q
    | |||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||| ||||| |    
T  4487024 gctttattttttgggtctttgctagttctgtgttcagaaacaaacaatagaaataaaaatagatgtaaaatactcatggatgtatggctattagtattac 4486925  T
Q  707 taagagttctatgtctttaggcaatatgt 735  Q
    |||||||||||||||||||||||||||||    
T  4486924 taagagttctatgtctttaggcaatatgt 4486896  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 321 - 363
Target Start/End: Original strand, 2269163 - 2269205
Alignment:
Q  321 cttactacattgcaacatggaaccaaaggtaggttctgttttg 363  Q
    |||| ||||||||||  ||||||||||||||||||||||||||    
T  2269163 cttaatacattgcaaattggaaccaaaggtaggttctgttttg 2269205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 205 - 250
Target Start/End: Original strand, 2269050 - 2269095
Alignment:
Q  205 atttgctaaaaattcatacaaataactgcagtcattatttcaggtt 250  Q
    ||||||||||||||||| | ||||| |||||| |||||||||||||    
T  2269050 atttgctaaaaattcattctaataattgcagttattatttcaggtt 2269095  T

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Target: chr5 (Bit Score: 153; Significance: 1e-80; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 153; E-Value: 1e-80
Query Start/End: Original strand, 507 - 735
Target Start/End: Complemental strand, 19022549 - 19022326
Alignment:
Q  507 cttgatgtgcagtgtggttttttctttgttgcgcgggggctgtcataggtccagcaggttgtggggtgatcaataggcgtaattacggtggctgtagttt 606  Q
    ||||||||||||||   |||||||||||||| | ||||| |||     |||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  19022549 cttgatgtgcagtgcaattttttctttgttgtgtgggggttgt-----gtccagcaggttgtggggtgatcaataggcgtaattacggtggctgtatttt 19022455  T
Q  607 gatttattttttgggtctatgctacttctgtgttcagaaacaaacaatagaaataaaaatagatgtaagatattcatggatgtatggctatttgtattgc 706  Q
    | |||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |||||||||||||| | |||||    
T  19022454 gctttattttttgggtctgtgctacttctgtgttcagaaacaaacaatagtaataaaaatagatgtaaaatattcatcgatgtatggctattagaattgc 19022355  T
Q  707 taagagttctatgtctttaggcaatatgt 735  Q
    |||||||||||||||||||||||||||||    
T  19022354 taagagttctatgtctttaggcaatatgt 19022326  T

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Target: chr5; HSP #2
Raw Score: 135; E-Value: 6e-70
Query Start/End: Original strand, 511 - 735
Target Start/End: Complemental strand, 22066427 - 22066219
Alignment:
Q  511 atgtgcagtgtggttttttctttgttgcgcgggggctgtcataggtccagcaggttgtggggtgatcaataggcgtaattacggtggctgtagtttgatt 610  Q
    ||||||||||  ||||||||||||||||| |||||||||     |||||||||||||||||||||||||||||||||||||||||||||||| |||| ||    
T  22066427 atgtgcagtgcagttttttctttgttgcgtgggggctgt-----gtccagcaggttgtggggtgatcaataggcgtaattacggtggctgtattttgctt 22066333  T
Q  611 tattttttgggtctatgctacttctgtgttcagaaacaaacaatagaaataaaaatagatgtaagatattcatggatgtatggctatttgtattgctaag 710  Q
    ||||||||||||||           ||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||| |||||||||||    
T  22066332 tattttttgggtct-----------gtgttcagaaacaaacaatagaaataaaaattgatgtaaaatattcatggatgtatggctattagtattgctaag 22066244  T
Q  711 agttctatgtctttaggcaatatgt 735  Q
    |||||||||||||||||||||||||    
T  22066243 agttctatgtctttaggcaatatgt 22066219  T

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Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 321 - 363
Target Start/End: Complemental strand, 19022747 - 19022705
Alignment:
Q  321 cttactacattgcaacatggaaccaaaggtaggttctgttttg 363  Q
    |||| ||||||||||| ||||||||||||||||||||||||||    
T  19022747 cttagtacattgcaacttggaaccaaaggtaggttctgttttg 19022705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 321 - 363
Target Start/End: Complemental strand, 22066623 - 22066581
Alignment:
Q  321 cttactacattgcaacatggaaccaaaggtaggttctgttttg 363  Q
    |||| ||||||||||| ||||||||||||||||||||||||||    
T  22066623 cttagtacattgcaacttggaaccaaaggtaggttctgttttg 22066581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0131 (Bit Score: 75; Significance: 4e-34; HSPs: 5)
Name: scaffold0131
Description:

Target: scaffold0131; HSP #1
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 645 - 735
Target Start/End: Original strand, 14100 - 14190
Alignment:
Q  645 aacaaacaatagaaataaaaatagatgtaagatattcatggatgtatggctatttgtattgctaagagttctatgtctttaggcaatatgt 735  Q
    ||||||||||||||||||||||||| |||| ||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||    
T  14100 aacaaacaatagaaataaaaatagaggtaaaatattcatggatgtatggctattagtattactaagagttctatgtctttaggcaatatgt 14190  T

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Target: scaffold0131; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 503 - 598
Target Start/End: Original strand, 13664 - 13759
Alignment:
Q  503 tttccttgatgtgcagtgtggttttttctttgttgcgcgggggctgtcataggtccagcaggttgtggggtgatcaataggcgtaattacggtggc 598  Q
    |||||||||||||||| | |||||||||| ||||||| |||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||    
T  13664 tttccttgatgtgcagcgcggttttttctatgttgcgtgggggctgtcataggtccagcaggttgtggagtgatcaataggcataattacggtggc 13759  T

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Target: scaffold0131; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 196 - 250
Target Start/End: Original strand, 13401 - 13455
Alignment:
Q  196 gctctcaacatttgctaaaaattcatacaaataactgcagtcattatttcaggtt 250  Q
    |||||||| ||||||||||||||||||| ||||||||||||||||||||||||||    
T  13401 gctctcaatatttgctaaaaattcatactaataactgcagtcattatttcaggtt 13455  T

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Target: scaffold0131; HSP #4
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 20 - 67
Target Start/End: Original strand, 13310 - 13357
Alignment:
Q  20 gtttagatttgttttcttgaatttgatgacaggatttaaaatcaatgt 67  Q
    |||||||||||||||||||| |||||| | ||||||||||||||||||    
T  13310 gtttagatttgttttcttgattttgattataggatttaaaatcaatgt 13357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0131; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 321 - 363
Target Start/End: Original strand, 13481 - 13523
Alignment:
Q  321 cttactacattgcaacatggaaccaaaggtaggttctgttttg 363  Q
    ||||||| |||||||| ||||||||||||||||||||||||||    
T  13481 cttactatattgcaacttggaaccaaaggtaggttctgttttg 13523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 205 - 250
Target Start/End: Complemental strand, 9392122 - 9392077
Alignment:
Q  205 atttgctaaaaattcatacaaataactgcagtcattatttcaggtt 250  Q
    ||||||||||||||||| | ||||||||| || |||||||||||||    
T  9392122 atttgctaaaaattcattctaataactgcggttattatttcaggtt 9392077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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