View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21213_high_21 (Length: 474)
Name: NF21213_high_21
Description: NF21213
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21213_high_21 |
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Alignment Details
Target: chr7 (Bit Score: 425; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 425; E-Value: 0
Query Start/End: Original strand, 14 - 454
Target Start/End: Complemental strand, 8169974 - 8169534
Alignment:
| Q |
14 |
agatcaatcattctaaccattcacttttggtatataaataccaaaatatcttagccatcatcaacatattttggtcatggcaatagatcatgagtcaagg |
113 |
Q |
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| T |
8169974 |
agatcaatcattctaaccattcacttttggtatataaataccaaaatatcttagccatcatcaacatattttggtcatggcaatagatcatgagtcaagg |
8169875 |
T |
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| Q |
114 |
attactctccggccattcaaagaaagtgatgctgacgatgtgttattgtgggcaagtgatgaaagagtcatgcaatatatgcgattggagttatgtaaat |
213 |
Q |
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| T |
8169874 |
attactctccggccattcaaagaaagtgatgctgacgatgtgttattgtgggcaagtgatgaaagagtcatgcaatatatgcgattggagttatgtaaat |
8169775 |
T |
|
| Q |
214 |
caagggaacaagctttgaatttcataaaaaatgattgcatttacccattccaacaatcaatatgtcttaatgatcactctattggaattgtttttgtcct |
313 |
Q |
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| T |
8169774 |
caagggaacaagcttcgaatttcataaaaaatgattgcatttacccattccaacaatcaatatgtcttaatgatcactctattggaattgtttttgtcct |
8169675 |
T |
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| Q |
314 |
tccttatcctgatgcaaagtttaaagcagatttaggttatgctattgggttcaactattggggccaaggtgtagctagcaaagcagtgaagattcttttg |
413 |
Q |
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| T |
8169674 |
tccttatcctgatgcaaagtttaaagcagatttaggttatgctattgggtttaactattggggccaaggtgtagccaccaaagcagtgaagattcttttg |
8169575 |
T |
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| Q |
414 |
tcttgtgtattccaagactttcctgatttggtaaggttgca |
454 |
Q |
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| T |
8169574 |
tcttgtgtattccaagactttcctgatttggtaaggttgca |
8169534 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 25 - 454
Target Start/End: Complemental strand, 8172593 - 8172165
Alignment:
| Q |
25 |
tctaaccattcacttttggtatataaataccaaaatatcttagccatcatcaacatattttggtcatggcaatagatcatgagtcaaggattactctccg |
124 |
Q |
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| T |
8172593 |
tctaaccacacacttttggtgtataaataccaaaatatcttagccat-attaacatattgtggtcatggcaatagatcatgagtcaaggatcactctccg |
8172495 |
T |
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| Q |
125 |
gccattcaaagaaagtgatgctgacgatgtgttattgtgggcaagtgatgaaagagtcatgcaatatatgcgattggagttatgtaaatcaagggaacaa |
224 |
Q |
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| T |
8172494 |
gccattcaaagaaagtgatgctgacgatgtgttattgtgggcaagtgatgaaagagtcatgcaatatacacgattgaagttatgtaaatcaagggaacaa |
8172395 |
T |
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| Q |
225 |
gctttgaatttcataaaaaatgattgcatttacccattccaacaatcaatatgtcttaatgatcactctattggaattgtttttgtccttccttatcctg |
324 |
Q |
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| T |
8172394 |
gctttgaatttcataaagaaagattgtatttacccattccaacaatcaatatgtcttgatgatcactctattggaattgtttttgttcttccaatttctt |
8172295 |
T |
|
| Q |
325 |
atgcaaagtttaaagcagatttaggttatgctattgggttcaactattggggccaaggtgtagctagcaaagcagtgaagattcttttgtcttgtgtatt |
424 |
Q |
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| T |
8172294 |
atgcaaagtttaaagcagatttaggttttgctattggattcaattattggggccaaggtatagccacaaaagcacttaagattcttttgtctcgagtgtt |
8172195 |
T |
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| Q |
425 |
ccaagactttcctgatttggtaaggttgca |
454 |
Q |
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| T |
8172194 |
ccaagagtttcctgacttgcaaaggttgca |
8172165 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 223 - 415
Target Start/End: Complemental strand, 8177352 - 8177157
Alignment:
| Q |
223 |
aagctttgaatttcataaaaaatgattgcatttacccattccaacaatcaatatgtcttaatgatcactctattggaattgtttttgtccttccttatcc |
322 |
Q |
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| T |
8177352 |
aagctttggatttcataaaaaatgaatgcatttacccaatccgccaatcaatatgtcttgatgaccactccattggaatggtttggattcttcctcatgc |
8177253 |
T |
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| Q |
323 |
---tgatgcaaagtttaaagcagatttaggttatgctattgggttcaactattggggccaaggtgtagctagcaaagcagtgaagattcttttgtc |
415 |
Q |
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| T |
8177252 |
taatgatgagaaatataaagcagatatgggttatgctattggattcaactattggggtcaagggattgccactaatgcagtgaagattcttctgtc |
8177157 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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