View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21213_high_26 (Length: 431)

Name: NF21213_high_26
Description: NF21213
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21213_high_26
NF21213_high_26
[»] chr7 (9 HSPs)
chr7 (18-387)||(29446307-29446676)
chr7 (165-326)||(29480288-29480449)
chr7 (205-323)||(29477205-29477323)
chr7 (31-120)||(29480149-29480238)
chr7 (199-304)||(29894548-29894653)
chr7 (193-326)||(29105907-29106040)
chr7 (195-323)||(29454931-29455059)
chr7 (195-323)||(29922884-29923012)
chr7 (231-303)||(47479653-47479725)
[»] scaffold0242 (2 HSPs)
scaffold0242 (205-323)||(14556-14674)
scaffold0242 (205-323)||(23391-23509)
[»] chr1 (3 HSPs)
chr1 (208-285)||(4015737-4015814)
chr1 (245-326)||(4367394-4367475)
chr1 (235-323)||(10218144-10218232)


Alignment Details
Target: chr7 (Bit Score: 354; Significance: 0; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 18 - 387
Target Start/End: Original strand, 29446307 - 29446676
Alignment:
Q  18 acatccttgatagctcaaatgatagtaaggatccacggaaagagtgaaagatgaattctgaattaaactattcaacgagtaaggaatgacactgcaatcc 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||    
T  29446307 acatccttgatagctcaaatgatagtaaggatccacggaaagagtgaaagatgaattctgaattaaacgattaaacgagtaaggaatgacactgcaatcc 29446406  T
Q  118 atcccatatccaccgtcaaaatcagtgcaatcatttgtgatgtgacttgtgactagtgtgaaaagaggattccgagttgctgatctgttgaggtgtaatt 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  29446407 atcccatatccaccgtcaaaatcagtgcaatcatttgtgatgtgacttgtgactagtgtaaaaagaggattccgagttgctgatctgttgaggtgtaatt 29446506  T
Q  218 tgacgaaggtgttatcggaaattcgggttttccaatacttattgacacacttgaatcgaacaagagatttgacgggaaggaaggaaaaaacctcggcgat 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29446507 tgacgaaggtgttatcggaaattcgggttttccaatacttattgacacacttgaatcgaacaagagatttgacgggaaggaaggaaaaaacctcggcgat 29446606  T
Q  318 gagatcatctgaaagggacggtaatccaaacataactctttctcttttacgagtggggatgaagttaggg 387  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29446607 gagatcatctgaaagggatggtaatccaaacataactctttctcttttacgagtggggatgaagttaggg 29446676  T

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Target: chr7; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 165 - 326
Target Start/End: Original strand, 29480288 - 29480449
Alignment:
Q  165 tgtgactagtgtgaaaagaggattccgagttgctgatctgttgaggtgtaatttgacgaaggtgttatcggaaattcgggttttccaatacttattgaca 264  Q
    ||||||||||||||| || ||||| || ||||  |||   |||||||||||||| || ||| ||  || ||||||| ||||||||||| |||||  ||||    
T  29480288 tgtgactagtgtgaagaggggatttcgtgttgaggattgattgaggtgtaattttacaaagttgggattggaaattagggttttccaagacttacagaca 29480387  T
Q  265 cacttgaatcgaacaagagatttgacgggaaggaaggaaaaaacctcggcgatgagatcatc 326  Q
    ||||||||||||||| ||||||||||||||||||||||||  | ||| | ||||||||||||    
T  29480388 cacttgaatcgaacaggagatttgacgggaaggaaggaaagtaactctgtgatgagatcatc 29480449  T

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Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 205 - 323
Target Start/End: Original strand, 29477205 - 29477323
Alignment:
Q  205 ttgaggtgtaatttgacgaaggtgttatcggaaattcgggttttccaatacttattgacacacttgaatcgaacaagagatttgacgggaaggaaggaaa 304  Q
    |||||||||||||| || ||| ||  ||| || ||| ||| ||||||| ||||  | ||||| |||| ||||||||||||||||||||||||||||||||    
T  29477205 ttgaggtgtaatttcacaaagctgggatcagagattagggatttccaagacttgctaacacatttgagtcgaacaagagatttgacgggaaggaaggaaa 29477304  T
Q  305 aaacctcggcgatgagatc 323  Q
      | ||| |||||||||||    
T  29477305 gtaactctgcgatgagatc 29477323  T

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Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 31 - 120
Target Start/End: Original strand, 29480149 - 29480238
Alignment:
Q  31 ctcaaatgatagtaaggatccacggaaagagtgaaagatgaattctgaattaaactattcaacgagtaaggaatgacactgcaatccatc 120  Q
    |||||||||||||| ||||| |||||||| |||||  | |  |||| ||||||||| |||||||||||||||| ||||||| || |||||    
T  29480149 ctcaaatgatagtacggatctacggaaagggtgaacaacgggttctcaattaaactgttcaacgagtaaggaacgacactgaaacccatc 29480238  T

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Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 199 - 304
Target Start/End: Complemental strand, 29894653 - 29894548
Alignment:
Q  199 gatctgttgaggtgtaatttgacgaaggtgttatcggaaattcgggttttccaatacttattgacacacttgaatcgaacaagagatttgacgggaagga 298  Q
    ||||| ||||||||||||||||||||||||  |||  | ||| ||||||||||| ||||  | |||||  ||||||||||||||||| | || ||||| |    
T  29894653 gatctattgaggtgtaatttgacgaaggtgggatcaaagattagggttttccaagacttgctaacacaagtgaatcgaacaagagatataaccggaagta 29894554  T
Q  299 aggaaa 304  Q
    ||||||    
T  29894553 aggaaa 29894548  T

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Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 193 - 326
Target Start/End: Complemental strand, 29106040 - 29105907
Alignment:
Q  193 gttgctgatctgttgaggtgtaatttgacgaaggtgttatcggaaattcgggttttccaatacttattgacacacttgaatcgaacaagagatttgacgg 292  Q
    ||||||||||| ||||| || ||||| |||||||    || ||||||  | ||||||||| ||||  ||||| || | ||||||| |||| || | ||||    
T  29106040 gttgctgatctcttgagatgcaatttcacgaaggcaggattggaaataagagttttccaagacttgctgacagacctaaatcgaagaagaaatataacgg 29105941  T
Q  293 gaaggaaggaaaaaacctcggcgatgagatcatc 326  Q
    |||||||||||| ||| || ||||||||||||||    
T  29105940 gaaggaaggaaagaacttctgcgatgagatcatc 29105907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 195 - 323
Target Start/End: Original strand, 29454931 - 29455059
Alignment:
Q  195 tgctgatctgttgaggtgtaatttgacgaaggtgttatcggaaattcgggttttccaatacttattgacacacttgaatcgaacaagagatttgacggga 294  Q
    |||||| || ||||| |||||||||| ||||  | | ||| ||||| ||| ||||||||||||||| || ||| ||||| ||| ||||  ||||||||||    
T  29454931 tgctgacctattgagatgtaatttgatgaagacggtgtcgaaaattagggctttccaatacttattcacgcacctgaattgaagaagaattttgacggga 29455030  T
Q  295 aggaaggaaaaaacctcggcgatgagatc 323  Q
    ||  | ||||  ||||| |||||||||||    
T  29455031 agataagaaagtacctcagcgatgagatc 29455059  T

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Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 195 - 323
Target Start/End: Original strand, 29922884 - 29923012
Alignment:
Q  195 tgctgatctgttgaggtgtaatttgacgaaggtgttatcggaaattcgggttttccaatacttattgacacacttgaatcgaacaagagatttgacggga 294  Q
    ||||||||| |||||||| ||||| ||||| |||  |||||| ||  |  |||||||| ||||| | |||| ||||||||||| ||||| ||| || |||    
T  29922884 tgctgatctcttgaggtgcaatttcacgaatgtgggatcggagatgagtattttccaagacttactaacactcttgaatcgaagaagaggtttcaccgga 29922983  T
Q  295 aggaaggaaaaaacctcggcgatgagatc 323  Q
    || |||||||  || || |||||||||||    
T  29922984 agaaaggaaagtacttcagcgatgagatc 29923012  T

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Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 231 - 303
Target Start/End: Original strand, 47479653 - 47479725
Alignment:
Q  231 atcggaaattcgggttttccaatacttattgacacacttgaatcgaacaagagatttgacgggaaggaaggaa 303  Q
    |||||||||| ||||||||||| ||||| | |||||  ||||||||| |||| |||  |||||||| ||||||    
T  47479653 atcggaaattagggttttccaagacttacttacacaactgaatcgaataagaaattcaacgggaagaaaggaa 47479725  T

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Target: scaffold0242 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: scaffold0242
Description:

Target: scaffold0242; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 205 - 323
Target Start/End: Original strand, 14556 - 14674
Alignment:
Q  205 ttgaggtgtaatttgacgaaggtgttatcggaaattcgggttttccaatacttattgacacacttgaatcgaacaagagatttgacgggaaggaaggaaa 304  Q
    |||||||||||||| || || |||  ||| || ||| |||||||||||  ||| || ||||| |||||||||||||||||||| ||||||||||||||||    
T  14556 ttgaggtgtaatttcacaaaagtgggatcagatattagggttttccaagccttgttaacacatttgaatcgaacaagagatttcacgggaaggaaggaaa 14655  T
Q  305 aaacctcggcgatgagatc 323  Q
      | ||| |||||||||||    
T  14656 gtaactctgcgatgagatc 14674  T

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Target: scaffold0242; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 205 - 323
Target Start/End: Original strand, 23391 - 23509
Alignment:
Q  205 ttgaggtgtaatttgacgaaggtgttatcggaaattcgggttttccaatacttattgacacacttgaatcgaacaagagatttgacgggaaggaaggaaa 304  Q
    |||||||||||||| || || |||  ||| || ||| |||||||||||  ||| || ||||| |||||||||||||||||||| ||||||||||||||||    
T  23391 ttgaggtgtaatttcacaaaagtgggatcagatattagggttttccaagccttgttaacacatttgaatcgaacaagagatttcacgggaaggaaggaaa 23490  T
Q  305 aaacctcggcgatgagatc 323  Q
      | ||| |||||||||||    
T  23491 gtaactctgcgatgagatc 23509  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000003; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 208 - 285
Target Start/End: Original strand, 4015737 - 4015814
Alignment:
Q  208 aggtgtaatttgacgaaggtgttatcggaaattcgggttttccaatacttattgacacacttgaatcgaacaagagat 285  Q
    ||||| ||||| || ||||||  |||||||||| ||||||||||| ||||| | |||||| |||||||||||||||||    
T  4015737 aggtgcaatttcacaaaggtggaatcggaaattagggttttccaagacttactcacacacctgaatcgaacaagagat 4015814  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 245 - 326
Target Start/End: Original strand, 4367394 - 4367475
Alignment:
Q  245 ttttccaatacttattgacacacttgaatcgaacaagagatttgacgggaaggaaggaaaaaacctcggcgatgagatcatc 326  Q
    |||||||| ||||| |||||||| ||||||||| |||| |||| ||||| || || ||||  ||||| || |||||||||||    
T  4367394 ttttccaagacttactgacacacctgaatcgaagaagatatttaacggggagaaacgaaagtacctcagcaatgagatcatc 4367475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 235 - 323
Target Start/End: Complemental strand, 10218232 - 10218144
Alignment:
Q  235 gaaattcgggttttccaatacttattgacacacttgaatcgaacaagagatttgacgggaaggaaggaaaaaacctcggcgatgagatc 323  Q
    |||||| ||||||||||| | ||| | |||||| |||| | |||||||||||| || ||||| |||||||  |||||||| | ||||||    
T  10218232 gaaattagggttttccaagatttactcacacacctgaagcaaacaagagatttcaccggaagaaaggaaagtacctcggcaacgagatc 10218144  T

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