View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21213_high_29 (Length: 395)
Name: NF21213_high_29
Description: NF21213
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21213_high_29 |
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Alignment Details
Target: chr3 (Bit Score: 206; Significance: 1e-112; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 19 - 224
Target Start/End: Complemental strand, 28806290 - 28806085
Alignment:
| Q |
19 |
atgaaatgattggtgaatgtgaattgaaatggcttgaagttaattgaaagtttatggctttaagttagggtttttgtgattgccaaatttataatactat |
118 |
Q |
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| T |
28806290 |
atgaaatgattggtgaatgtgaattgaaatggcttgaagttaattgaaagtttatggctttaagttagggtttttgtgattgccaaatttataatactat |
28806191 |
T |
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| Q |
119 |
tgagtctttgaatgaaagagaaagaaaataaaaggaaaagggtaaagcttgaatgatatgaagctttcaacatcagggttgggtcagcagggacatgaag |
218 |
Q |
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| T |
28806190 |
tgagtctttgaatgaaagagaaagaaaataaaaggaaaagggtaaagcttgaatgatatgaagctttcaacatcagggttgggtcagcagggacatgaag |
28806091 |
T |
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| Q |
219 |
gtatcc |
224 |
Q |
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|||||| |
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| T |
28806090 |
gtatcc |
28806085 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 282 - 354
Target Start/End: Complemental strand, 28806027 - 28805953
Alignment:
| Q |
282 |
gtcttacatatatataaatatgttgtgt--ctctatcatagtactccttttgtgttgtttaaacaaccttgtaag |
354 |
Q |
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| T |
28806027 |
gtcttacatatatataaatatgttgtgtgtctctatcatagtactccttttgtgttgtttaaacaaccttgtaag |
28805953 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 154 - 223
Target Start/End: Complemental strand, 32499239 - 32499170
Alignment:
| Q |
154 |
aaaagggtaaagcttgaatgatatgaagctttcaacatcagggttgggtcagcagggacatgaaggtatc |
223 |
Q |
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|||| |||| |||||| || ||||||||||||||||||||| || |||||||||| |||||||||||| |
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| T |
32499239 |
aaaaaggtatagcttgtgtgttatgaagctttcaacatcaggaatgagtcagcagggtcatgaaggtatc |
32499170 |
T |
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