View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21213_high_32 (Length: 369)

Name: NF21213_high_32
Description: NF21213
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21213_high_32
NF21213_high_32
[»] chr5 (3 HSPs)
chr5 (13-353)||(31338216-31338556)
chr5 (275-353)||(31338562-31338645)
chr5 (28-96)||(42652418-42652486)
[»] chr3 (2 HSPs)
chr3 (13-353)||(21309877-21310218)
chr3 (99-212)||(47310404-47310517)
[»] chr4 (2 HSPs)
chr4 (13-297)||(50564825-50565110)
chr4 (13-139)||(27103641-27103767)
[»] chr6 (2 HSPs)
chr6 (26-291)||(4486175-4486419)
chr6 (13-139)||(2501055-2501181)
[»] chr1 (1 HSPs)
chr1 (32-261)||(45088762-45088992)
[»] chr8 (1 HSPs)
chr8 (105-194)||(35942867-35942956)


Alignment Details
Target: chr5 (Bit Score: 325; Significance: 0; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 13 - 353
Target Start/End: Original strand, 31338216 - 31338556
Alignment:
Q  13 aatatcagctataaataaatgtctaatttgagtcgaacatgtctcatatatcttcagattataatccaaagagcaagcaatattgactaaagcatctgca 112  Q
    |||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||    
T  31338216 aatatcagctataagtaaatgtctaatttgagtcgaacatggctcatatatcttcagattataatccaaagagcaagcaatgttggctaaagcatctgca 31338315  T
Q  113 caccgattgacctctcgatatgaatgagaaacaacaacgttccaatccatctccaataagcgacgaattttattaactaacgctctacccaagcgactat 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31338316 caccgattgacctctcgatatgaatgagaaacaacaacgttccaatccatctccaataagcgacgaattttattaactaacgctctacccaagcgactat 31338415  T
Q  213 ctgtcacaccttcctttatagtcttctccaaactaacataatctacattcaattcaactgctgtatatctcatccttctcacatatttcaaacagtactc 312  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31338416 ctgtcacaccttcctttatagtcttctccaaactaacataatctacattcaattcaactgctgtatatctcatccttctcacatatttcaaacagtactc 31338515  T
Q  313 cccaaagctccgccaaaaacgcattgcactcgccaatgaat 353  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  31338516 cccaaagctccgccaaaaacgcattgcactcgccaatgaat 31338556  T

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Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 275 - 353
Target Start/End: Original strand, 31338562 - 31338645
Alignment:
Q  275 gtatatctcatccttctcacatatttcaaacagt-----actccccaaagctccgccaaaaacgcattgcactcgccaatgaat 353  Q
    ||||||| |||||||||||||||| ||||||  |     ||||||||||||||| ||| |||||||||||||||||||||||||    
T  31338562 gtatatcccatccttctcacatatctcaaaccctcaaacactccccaaagctccaccacaaacgcattgcactcgccaatgaat 31338645  T

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Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 28 - 96
Target Start/End: Original strand, 42652418 - 42652486
Alignment:
Q  28 taaatgtctaatttgagtcgaacatgtctcatatatcttcagattataatccaaagagcaagcaatatt 96  Q
    |||||||||||| ||||||| ||||| ||| |||||||||| |||||||| ||| ||||| ||||||||    
T  42652418 taaatgtctaatatgagtcggacatgcctcgtatatcttcaaattataattcaaggagcacgcaatatt 42652486  T

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Target: chr3 (Bit Score: 213; Significance: 1e-117; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 13 - 353
Target Start/End: Original strand, 21309877 - 21310218
Alignment:
Q  13 aatatcagctataaataaatgtctaatttgagtcgaacatgtctcatatatcttcagattataatccaaagagcaagcaatattgactaaagcatctgca 112  Q
    |||||||||||||| |||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||| ||| ||||||||||||||    
T  21309877 aatatcagctataagtaaatgtctaatttgagtcggacatgtctcaaatatcttcagattataatccaaagagcaagcaatgttggctaaagcatctgca 21309976  T
Q  113 caccgattgacctctcgatatgaatgagaaacaacaacgttccaatccatctccaataagcgacgaattttattaactaacgctctacccaagcgactat 212  Q
    ||||||||  |||||||||||||||||||||||||||||| |||||||||||    ||| ||||||||||  ||||| | ||||||||||||||||||||    
T  21309977 caccgattagcctctcgatatgaatgagaaacaacaacgtaccaatccatct----taaacgacgaatttgtttaaccagcgctctacccaagcgactat 21310072  T
Q  213 ctgtcacaccttcctttatagtcttctccaaactaacataatctacattcaattcaactgctgtatatctcatccttctcacatatttcaaa-----cag 307  Q
    |||||||||||| ||||||||||||||||| ||||||| |||||||||||||||| ||||||| ||||| |||||||||||||||| ||| |     ||     
T  21310073 ctgtcacacctttctttatagtcttctccacactaacacaatctacattcaattctactgctgcatatcccatccttctcacatatctcagaccctccaa 21310172  T
Q  308 tactccccaaagctccgccaaaaacgcattgcactcgccaatgaat 353  Q
     ||||||||||||||||||| |||||||||||||||||||||||||    
T  21310173 cactccccaaagctccgccacaaacgcattgcactcgccaatgaat 21310218  T

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Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 99 - 212
Target Start/End: Complemental strand, 47310517 - 47310404
Alignment:
Q  99 ctaaagcatctgcacaccgattgacctctcgatatgaatgagaaacaacaacgttccaatccatctccaataagcgacgaattttattaactaacgctct 198  Q
    ||||| |||| |||||||||||  ||||| ||||||| ||| ||||  |||| || ||||| |||||||| ||| ||||||||| ||| ||  ||||||     
T  47310517 ctaaaacatccgcacaccgattagcctcttgatatgagtgaaaaacttcaacatttcaatcaatctccaacaagtgacgaatttgatttaccgacgctcg 47310418  T
Q  199 acccaagcgactat 212  Q
    ||||||||||||||    
T  47310417 acccaagcgactat 47310404  T

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Target: chr4 (Bit Score: 90; Significance: 2e-43; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 13 - 297
Target Start/End: Complemental strand, 50565110 - 50564825
Alignment:
Q  13 aatatcagctataaataaatgtctaatttgagtcgaacatgtctcatatatcttcagattataatccaaagagcaagcaatattgactaaagcatctgca 112  Q
    |||||||||||  ||||||||||||||||||||   ||||||||| |||||||||| ||||||||||||||||||  || ||||  |||||| || ||||    
T  50565110 aatatcagctaacaataaatgtctaatttgagt---acatgtctcgtatatcttcaaattataatccaaagagcacacagtatttgctaaagtatttgca 50565014  T
Q  113 caccgattgacctctcgatatgaatgagaaacaacaacgttccaatccatctccaataagcgacgaattttattaactaacgctctacccaagcgactat 212  Q
    |||  ||| |||||| |||| |||||||||||  |||| ||||||||||||||||||||| || | ||||||||||| |||  | |||| ||  ||||||    
T  50565013 cactaattaacctcttgatacgaatgagaaacttcaacattccaatccatctccaataagtgatggattttattaaccaacattgtaccaaaatgactat 50564914  T
Q  213 ctgtcacaccttcctttatagtcttctcca----aactaacataatctacattcaattcaactgctgtatatctcatccttctcacata 297  Q
     |||||||||||||||||||  |  |||||    || |||||||||||||||| ||||||||  || || ||| |||||||||| ||||    
T  50564913 ttgtcacaccttcctttatatcccgctccacactaattaacataatctacatttaattcaacgactctaaatcccatccttctcgcata 50564825  T

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Target: chr4; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 13 - 139
Target Start/End: Complemental strand, 27103767 - 27103641
Alignment:
Q  13 aatatcagctataaataaatgtctaatttgagtcgaacatgtctcatatatcttcagattataatccaaagagcaagcaatattgactaaagcatctgca 112  Q
    |||||||||||  |  ||||||||||| |||||||||||| ||||||||||||||||||||||||||||||| ||  ||||||| ||| ||| ||| |||    
T  27103767 aatatcagctaacagaaaatgtctaatctgagtcgaacatatctcatatatcttcagattataatccaaagaacatccaatatttactgaagtatccgca 27103668  T
Q  113 caccgattgacctctcgatatgaatga 139  Q
      ||||||  |||||||||| ||||||    
T  27103667 tgccgattagcctctcgatacgaatga 27103641  T

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Target: chr6 (Bit Score: 72; Significance: 1e-32; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 26 - 291
Target Start/End: Original strand, 4486175 - 4486419
Alignment:
Q  26 aataaatgtctaatttgagtcgaacatgtctcatatatcttcagattataatccaaagagcaagcaatattgactaaagcatctgcacaccgattgacct 125  Q
    ||||||||| |||||||||| | ||||||||||||||||||||||||||||||||||||||||| |||  || ||||| |||||                    
T  4486175 aataaatgtgtaatttgagttggacatgtctcatatatcttcagattataatccaaagagcaagtaat--tggctaaatcatct---------------- 4486256  T
Q  126 ctcgatatgaatgagaaacaacaacgttccaatccatctccaataagcgacgaattttattaactaacgctctacccaagcgactatctgtcacaccttc 225  Q
      | |||||||| ||||||| |||| ||| |||||||||| |||| || |    |||||||||| || ||||||||||| ||||||||||||| ||||||    
T  4486257 --caatatgaataagaaacatcaacattctaatccatctctaata-gcaaattcttttattaaccaaagctctacccaaacgactatctgtcataccttc 4486353  T
Q  226 ctttatagtcttctccaaactaacataatctacattcaattcaactgctgtatatctcatccttct 291  Q
    |||||||||||||| || ||||| | |||| |||||||||||||||||| || ||| |||||||||    
T  4486354 ctttatagtcttcttcacactaatagaatccacattcaattcaactgctctagatcccatccttct 4486419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 13 - 139
Target Start/End: Complemental strand, 2501181 - 2501055
Alignment:
Q  13 aatatcagctataaataaatgtctaatttgagtcgaacatgtctcatatatcttcagattataatccaaagagcaagcaatattgactaaagcatctgca 112  Q
    |||||||||||  |  ||||||||||| |||||||||||| ||||||||||||||||||||||||||||||| ||  ||||||| ||| ||| ||| |||    
T  2501181 aatatcagctaacagaaaatgtctaatctgagtcgaacatatctcatatatcttcagattataatccaaagaacatccaatatttactgaagtatccgca 2501082  T
Q  113 caccgattgacctctcgatatgaatga 139  Q
      ||||||  |||||||||| ||||||    
T  2501081 tgccgattagcctctcgatacgaatga 2501055  T

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Target: chr1 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 32 - 261
Target Start/End: Original strand, 45088762 - 45088992
Alignment:
Q  32 tgtctaatttgagtcgaacatgtctcatatatcttcagattataatccaaagagcaagcaatattgactaaagcatctgcaca-ccgattgacctctcga 130  Q
    ||||||||  |||||  ||||||||| || ||||| ||||||||||  ||||| || ||||||||   ||||||||||  ||| ||||||   || | ||    
T  45088762 tgtctaatacgagtcagacatgtctcgtaaatctttagattataatttaaagaacatgcaatatttgttaaagcatctaaacaaccgattagtcttttga 45088861  T
Q  131 tatgaatgagaaacaacaacgttccaatccatctccaataagcgacgaattttattaactaacgctctacccaagcgactatctgtcacaccttccttta 230  Q
    ||||||||||||||  |||| |||||||| || | |||||||| | ||||| | ||||| ||  |||||| ||| ||||||| |||||  ||||||||||    
T  45088862 tatgaatgagaaacttcaacattccaatctattttcaataagcaaagaattcttttaaccaatactctacacaaacgactatatgtcatgccttccttta 45088961  T
Q  231 tagtcttctccaaactaacataatctacatt 261  Q
    || ||| ||||| ||||||| ||||||||||    
T  45088962 taatctgctccatactaacagaatctacatt 45088992  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 105 - 194
Target Start/End: Original strand, 35942867 - 35942956
Alignment:
Q  105 catctgcacaccgattgacctctcgatatgaatgagaaacaacaacgttccaatccatctccaataagcgacgaattttattaactaacg 194  Q
    ||||| |||||| ||| || ||||||||||||||||||| | |||  ||||||||||  |||||||||| |||||  |||||||| ||||    
T  35942867 catctacacaccaattaacatctcgatatgaatgagaaagatcaatattccaatccaaatccaataagcaacgaaacttattaaccaacg 35942956  T

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